RHESUS-VCUAUZR32

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalTrue Length317 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGL / V
Functional i	True
Length	317 nt
Protein UID i	RHESUS-VP-SGOM4Q (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VCUAUZR32). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGLV5-95*01, IGLV5-ABL*01. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGLV24-PJEQ*01	IgLabel	MUSA, OGRDB
IGLV5-95*01	IMGT	IMGT
IGLV5-ABL*01	RhGLDB+	RhGLDB+

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
BK063717.1	NCBI accession	ncbi_nucleotide

Former IMGT names i

Former name	Last seen in IMGT release
*IGLV5-701**	2016-12-19

External records i

genbank:MF989466: GENBANK:MF989466 genbank:IMGT000062: GENBANK:IMGT000062 NCBI nucleotide: link GenBank: GENBANK:BK063717 GenBank: GENBANK:BK063717.1 IMGT: IGLV5-95*01 OGRDB: IGLV24-PJEQ*01

Literature references 11 total · 6 verified · 2 sequence-in-paper · 3 name-mentioned* i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
25319530		verified	MUSA
27525066		verified	MUSA
29163486		verified	MUSA
31080066		verified	MUSA
34875068		verified	ncbi_nucleotide
35335026		verified	ncbi_nucleotide
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp
38707998	Maintenance of caecal homeostasis by diverse adaptive immune cells in the rhesus macaque.	sequence in paper	literature_supp
28813462	A comprehensive profiling of T- and B-lymphocyte receptor repertoires from a Chinese-origin rhesus macaque by high-throughput sequencing.	name mentioned^*	literature_supp
38042809	Interaction dynamics between innate and adaptive immune cells responding to SARS-CoV-2 vaccination in non-human primates.	name mentioned^*	literature_supp
39341987	Full-length single-cell BCR sequencing paired with RNA sequencing reveals convergent responses to pneumococcal vaccination.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, MUSA, OGRDB, RhGLDB+, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGCTCCAGACCCATGAGGAAGTCAGACAAAAACC	IMGT MUSA	RHESUS-RJJYSU

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGCCTGGACTCTTCTCCTTCTCATGCTCCTCTCTCACTGCACAGGTTCCCTCTCC	46 + 11 nt	IMGT	RHESUS-L7AXSG
ATGGCCTGGACTCTTCTCCTTCTCATGCTCCTCTCTCACTGCACAGGTGTTCCCTCTCC	48 + 11 nt	MUSA	RHESUS-LOO6TB

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VCUAUZR32/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

317 nt

CAGCCTGTGCTGACTCAGCCATCTTCCCATTCCGCATCTCCTGGAGCGCCAGCCAGACTCACCTGCACGCTGAGCAGTGGCTTCAGTGTTGGTGACTTCTGGATACGGTGGTACCAACAAAAGCCAGGGAGCCCTCCCCGGTATCTCCTGTACTACCACTCAGACTCAGATAAGCACCAAGGCTCTGGAGTTCCCAGCCGCTTCTCTGGATCCAATGATGCATCAGCCAATGCAGGGATTCTGCATATCTCTGGGCTCCAGCCTGAGGATGAGGCTGACTATTACTGTTGTACATGGCATGGCAACTCTAAGACTCA

Amino-acid sequence (V-REGION)

105 aa

QPVLTQPSSHSASPGAPARLTCTLSSGFSVGDFWIRWYQQKPGSPPRYLLYYHSDSDKHQGSGVPSRFSGSNDASANAGILHISGLQPEDEADYYCCTWHGNSKT

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases