RHESUS-VDGB7JSD4

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGK TypeV FunctionalTrue Length305 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGK / V
Functional i	True
Length	305 nt
Protein UID i	RHESUS-VP-67HCNJ (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VDGB7JSD4). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGKV2-86*01, IGKV2-AAE*02_S4422. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGKV2-274M*01	IgLabel	MUSA
IGKV2-EOM2*05	IgLabel	OGRDB
IGKV2-86*01	IMGT	IMGT
IGKV2-AAE*02_S4422	VRC	VRC

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
BK063716.1	NCBI accession	ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:BK063716 GenBank: GENBANK:BK063716.1 IMGT: IGKV2-86*01 OGRDB: IGKV2-EOM2*05

Literature references 3 total · 2 verified · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
34875068		verified	ncbi_nucleotide
35335026		verified	ncbi_nucleotide
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp

Contributed by IMGT, MUSA, OGRDB, VRC, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAATGGTACAGCCCCGAACAGAAACC	IMGT MUSA	RHESUS-RJDXI6
v_rs	CACAGTGGTACAGCCCCGAACAGAAACC	MUSA	RHESUS-RQ7CL4

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGAAGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGCTCTCTGGATCCAGTGGG	49 + 11 nt	IMGT	RHESUS-LAJVF6
ATGAAGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGCTCTCTGGTGATCCAGTGGG	51 + 11 nt	MUSA	RHESUS-LK4Y5I
ATGAAGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGCTCCCTGGTGATCCAGTGGG	51 + 11 nt	MUSA	RHESUS-LP6NLM

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VDGB7JSD4/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

305 nt

GATATTGTGATGACCCAGACTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCTTGGATAGTGAAGATGGAAACACCTATTTGGATTGGTACCTGCAGAAGCCGGGCCAGTCTCCACAGCCCTTGATTTATGAGGTTTCCAACCGGGCCTCTGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGACACTGATTTCACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAATATACACACATTCCTCC

Amino-acid sequence (V-REGION)

101 aa

DIVMTQTPLSLPVTPGEPASISCRSSQSLLDSEDGNTYLDWYLQKPGQSPQPLIYEVSNRASGVPDRFSGSGSDTDFTLKISRVEAEDVGVYYCMQYTHIP

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases