RHESUS-VF3TGJLY4
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-6JOO*05_t5a_g6a_g24a_g26a_a27g_g32a_34ccaag38_g42a_c44a_g46a_g59c_c74a_c84a_a109t_c110a_a112t_g114a_a119g_g122c_g123c_126ttcc129_a145g_g156a_g159a_c161t_t162a_c165t_a169t_t172g_a186t_g188a_g190c_a194t_a197g_c198t_t203c_g205c_c207a_g211-_g220a_c223a_g224c_g239a_c243a_c258a_t262c_c265t_c279t_t288a_a293-_297------------------------320: a Macaca mulatta IGH V allele sequence, 270 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 270 nt |
| Protein UID i | RHESUS-VP-UUZDKI (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VF3TGJLY4). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-6JOO*05_t5a_g6a_g24a_g26a_a27g_g32a_34ccaag38_g42a_c44a_g46a_g59c_c74a_c84a_a109t_c110a_a112t_g114a_a119g_g122c_g123c_126ttcc129_a145g_g156a_g159a_c161t_t162a_c165t_a169t_t172g_a186t_g188a_g190c_a194t_a197g_c198t_t203c_g205c_c207a_g211-_g220a_c223a_g224c_g239a_c243a_c258a_t262c_c265t_c279t_t288a_a293-_297------------------------320 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | AACTGTGCATTACTGTATGTGAGGCACTAGGTAAGAAGAC | MUSA | RHESUS-RY6YE2 |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGAGTTTGGGCTGAGCTAGGTTTTCACTGTTGCTGTTTTAAAAGGTGTGTCCAGTGT | 48 + 11 nt | MUSA | RHESUS-L3DRKP |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VF3TGJLY4/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases