RHESUS-VFDIENZXE

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalTrue Length290 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGL / V
Functional i	True
Length	290 nt
Protein UID i	RHESUS-VP-XWRIUG (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VFDIENZXE). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGLV3-BR3M*02	IgLabel	MUSA
IGLV3-HTIG*05	IgLabel	OGRDB
IGLV3-27*02	IMGT	IMGT

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
NW_001095158.1	NCBI accession	ncbi_nucleotide

Former IMGT names i

Former name	Last seen in IMGT release
*IGLV3-501**	2020-01-31

External records i

NCBI nucleotide: link GenBank: GENBANK:NW_001095158 IMGT: IGLV3-27*02 OGRDB: IGLV3-HTIG*05

Literature references 3 total · 3 name-mentioned* i

PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
28813462	A comprehensive profiling of T- and B-lymphocyte receptor repertoires from a Chinese-origin rhesus macaque by high-throughput sequencing.	name mentioned^*	literature_supp
41021799	Molecular divergence and convergence of mammalian antibody responses to the influenza virus hemagglutinin stem.	name mentioned^*	literature_supp
41941497	Pigs lacking Natural Killer T cells have altered cellular responses to influenza.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, MUSA, OGRDB, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGACACAGACAGATGCGGAAGTGAGACAGAAACC	IMGT MUSA	RHESUS-R3GKHL
v_rs	CACAGTGACACAGACAGATGGGGAAGTGAGACAGAAACC	MUSA	RHESUS-RJ775E

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGCCTGGACTCCTCTCTGGCTCACCCTCCTCAGTCTTTGCACAGGTGTTCTGTGGTT	48 + 11 nt	MUSA	RHESUS-LSE5P6
ATGGCCTGGACTCCTCTCTGGCTCACCCTCCTCAGTCTTTGCACAGGTTCTGTGGTT	46 + 11 nt	IMGT	RHESUS-LVT5F6

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VFDIENZXE/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

290 nt

TCTTCTGAGCTGACTCAGGACCCTGCAGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACTTGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGGTAACAACAACCGGCCCTCAGGGATCCCAGAGCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGTGGAAGATGAGGCTGACTATTACTGTGACTCCTGGGACAGCAGCGGTACCCATCC

Amino-acid sequence (V-REGION)

96 aa

SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVVYGNNNRPSGIPERFSGSSSGNTASLTITGAQVEDEADYYCDSWDSSGTH

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases