RHESUS-VFFIWR6YB
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV5-20*02, IGHV5-15*01_S4790, IGHV5-ABI*01_S4790: a Macaca mulatta IGH V allele sequence, 296 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | True |
| Length | 296 nt |
| Protein UID i | RHESUS-VP-72KCJ4 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: formerly IGHV5-2*01 (to 2020-01-31);
Allele names i
Every name below denotes this exact sequence (RHESUS-VFFIWR6YB). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHV5-20*02, IGHV5-15*01_S4790, IGHV5-ABI*01_S4790. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV5-4KAP*15 | IgLabel | MUSA |
| IGHV5-D2NK*15 | IgLabel | OGRDB |
| IGHV5-20*02 | IMGT | IMGT |
| IGHV5-15*01_S4790 | KIMDB | KIMDB |
| IGHV5-ABI*01_S4790 | RhGLDB+ | RhGLDB+ |
Other names & identifiers
Alternative and former names, e.g. IMGT clone names, plus accession identifiers.
| Name | Kind | Source(s) |
|---|---|---|
| NW_001121239.1 | NCBI accession | ncbi_nucleotide |
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGHV5-2*01 | 2020-01-31 |
External records i
NCBI nucleotide: link NCBI Gene: NCBIGENE:100425798 GenBank: GENBANK:NW_001121239 IMGT: IGHV5-20*02 OGRDB: IGHV5-D2NK*15
Literature references i
PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 35419009 | Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque. | sequence in paper | literature_supp |
| 34813501 | B cell receptor isotypes differentially associate with cell signaling, kinetics, and outcome in chronic lymphocytic leukemia. | name mentioned* | literature_supp |
| 39000308 | Recapitulation of HIV-1 Neutralization Breadth in Plasma by the Combination of Two Broadly Neutralizing Antibodies from Different Lineages in the Same SHIV-Infected Rhesus Macaque. | name mentioned* | literature_supp |
| 39698082 | Comprehensive method for producing high-affinity mouse monoclonal antibodies of various isotypes against (4-hydroxy-3-nitrophenyl)acetyl (NP) hapten. | name mentioned* | literature_supp |
| 41410768 | Convergent mutation trajectories convert functional self-tolerance in IGHV4-34 B cells to genetic tolerance encoded in the antibody. | name mentioned* | literature_supp |
* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.
Contributed by IMGT, KIMDB, MUSA, OGRDB, RhGLDB+, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGAGAGAAACCAGCACTGAGAGCACCAAAAACC | IMGT MUSA | RHESUS-RBU6SS |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGGGTCAACTGCCATCCTCACCCTCCTACTGGCTGTTCTCCAAGGTGAGTCTGTGCC | 48 + 11 nt | MUSA | RHESUS-LGYT5E |
| ATGGGGTCAACTGCCATCCTCACCCTCCTACTGGCTGTTTCTCCAGGAGTCTGTGCC | 46 + 11 nt | IMGT | RHESUS-LZN5WY |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VFFIWR6YB/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases