RHESUS-VFUZJF5AB
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGLV4-17*02, IGLV27-CPNX*01_t111c: a Macaca mulatta IGL V allele sequence, 320 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGL / V |
| Functional i | False |
| Length | 320 nt |
| Protein UID i | RHESUS-VP-U36DEX (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: formerly IGLV4-3*01 (to 2020-01-31);
Allele names i
Every name below denotes this exact sequence (RHESUS-VFUZJF5AB). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGLV4-17*02, IGLV27-CPNX*01_t111c. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGLV4-17*02 | IMGT | IMGT |
| IGLV27-CPNX*01_t111c | VDJbase | MUSA |
Other names & identifiers
Alternative and former names, e.g. IMGT clone names, plus accession identifiers.
| Name | Kind | Source(s) |
|---|---|---|
| NW_001095158.1 | NCBI accession | ncbi_nucleotide |
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGLV4-3*01 | 2020-01-31 |
External records i
NCBI nucleotide: link GenBank: GENBANK:NW_001095158 IMGT: IGLV4-17*02
Literature references i
PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 25338678 | Sequencing of the human IG light chain loci from a hydatidiform mole BAC library reveals locus-specific signatures of genetic diversity. | name mentioned* | literature_supp |
| 31839985 | More than one antibody of individual B cells revealed by single-cell immune profiling. | name mentioned* | literature_supp |
| 34587480 | Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses. | name mentioned* | literature_supp |
| 36328595 | Myeloma immunoglobulin rearrangement and translocation detection through targeted capture sequencing. | name mentioned* | literature_supp |
| 41803327 | IFN-gene signatures in B cells following influenza A and B virus infection and influenza vaccination. | name mentioned* | literature_supp |
* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.
Contributed by IMGT, MUSA, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGACACAGACAAAGAAGTGAGGCCAAAACATACCCC | IMGT | RHESUS-RQFNGM |
| v_rs | CACAGTGACACAGACAAAGAAGTGAGGCCAAAACATACC | MUSA | RHESUS-RQXCA2 |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGTCTATGTCTCCTTCTACCTCCTGCCCTTCATTTTCCCCACAGGTCTCTGTGCT | 46 + 11 nt | IMGT | RHESUS-LI63GL |
| ATGGTCTATGTCTCCTTCTACCTCCTGCCCTTCATTTTCCCCACAGGTGTCTCTGTGCT | 48 + 11 nt | MUSA | RHESUS-LUQMEU |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VFUZJF5AB/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases