RHESUS-VGBSSF6RH

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length301 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	301 nt
Protein UID i	RHESUS-VP-E6MBXK (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VGBSSF6RH). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV2-95*03, IGHV2-69*02_S8202. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV2-5KIN*04	IgLabel	MUSA
IGHV2-5VX5*05	IgLabel	OGRDB
IGHV2-95*03	IMGT	IMGT
IGHV2-69*02_S8202	KIMDB	KIMDB

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
MT542353.1	NCBI accession	ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:MT542353 GenBank: GENBANK:MT542353.1 IMGT: IGHV2-95*03 OGRDB: IGHV2-5VX5*05

Literature references 2 total · 1 verified · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
33484642		verified	ncbi_nucleotide
35419009	Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque.	sequence in paper	literature_supp

Contributed by IMGT, KIMDB, MUSA, OGRDB, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGAGACACAGCCCCGGGCGCCTCCTGTACAAGAACC	IMGT MUSA	RHESUS-RIHVVP

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACACGCTTTGCTACACACTCCTGCTACTGACCGTCCCGTCCTGTGGGTCTTGTCC	48 + 11 nt	MUSA	RHESUS-LAMHJA
ATGGACACGCTTTGCTACACACTCCTGCTACTGACCGTCCCGTCCTGGGTCTTGTCC	46 + 11 nt	IMGT	RHESUS-LDYR6A

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VGBSSF6RH/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

301 nt

CAGGTCACCTTGAAGGAGTCTGGTCCTGCGCTCGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCAATCAGCACTACTGGAACAGGTGTGGGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAATGGCTTGCAAGCATTTATTGGAATGATAGTAAATACTACAGCACATCGCTGAAGAGCAGGCTCACCATCTCCACGGACACCTCCAAGAACCAGGTGGTTCTGACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACGGGTAC

Amino-acid sequence (V-REGION)

100 aa

QVTLKESGPALVKPTQTLTLTCTFSGFSISTTGTGVGWIRQPPGKALEWLASIYWNDSKYYSTSLKSRLTISTDTSKNQVVLTMTNMDPVDTATYYCARV

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases