RHESUS-VGNDLNW5G
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-2UXX*04_i0g_g1t_g3t_c7t_a8c_g9c_11-----------------27_g31-_g32a_t34c_37tcat40_g49a_c53t_c55t_a58c_g59a_g68a_g112t_c114a_c118a_a119g_c120g_g123a_g128a_c134t_g141a_g146a_g151a_g153t_g156a_g159a_c161t_t164a_g165t_t169a_t171a_g175a_a194t_a197g_c201t_g205c_g211c_a221g_c222t_c223a_t226c_c231t_a232g_c234a_g241t_c248t_a250g_a256t_262-------------------280_288-----292_c294a_c296t_t307c_g315t_a316t: a Macaca mulatta IGH V allele sequence, 255 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 255 nt |
| Protein UID i | RHESUS-VP-LTW2XG (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VGNDLNW5G). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-2UXX*04_i0g_g1t_g3t_c7t_a8c_g9c_11-----------------27_g31-_g32a_t34c_37tcat40_g49a_c53t_c55t_a58c_g59a_g68a_g112t_c114a_c118a_a119g_c120g_g123a_g128a_c134t_g141a_g146a_g151a_g153t_g156a_g159a_c161t_t164a_g165t_t169a_t171a_g175a_a194t_a197g_c201t_g205c_g211c_a221g_c222t_c223a_t226c_c231t_a232g_c234a_g241t_c248t_a250g_a256t_262-------------------280_288-----292_c294a_c296t_t307c_g315t_a316t | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | AACCAAGTAACGGGAAGTCAGTGTGAAACAAGACAAAAT | MUSA | RHESUS-RKYE3A |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGGGGCAGGTCTTTCCCTTGCTGTGCTCATCATGGTAAATAAGTTAGTTCATGGT | 46 + 11 nt | MUSA | RHESUS-LNWASC |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VGNDLNW5G/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases