RHESUS-VGY2LZO5W
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV9-OGUP*03_i0aaaa_g1a_g3t_t5g_g6a_c7a_c10a_g12a_g13t_g16c_i17t_20tcat23_g26a_a27t_c33a_g36a_t38a_c40g_g42a_c43t_t45a_g46a_g47t_g49t_g50t_c53t_c54a_t56a_g57a_a58t_a60t_t62c_c63a_c65a_g68-_t69-_79---a82_85caaag89_g104a_g106c_c108a_c111g_t112a_114tcgat118_121aatcc125_c127t_g128a_c129t_g132a_g133a_c134a_c136a_138caatg142_144catcaat150_153catca157_159tcacaga165_t167a_g168t_c174a_g178a_180accctaaaattt191_g193c_c194a_a195t_a197g_t199a_a200c_g202a_c204a_c206a_t208a_t210c_g211c_t212a_a214g_a216t_g220a_a223c_g224a_226--agt230_a232c_t235c_c236t_a240c_t243a_g244a_t246g_t247a_c248a_254---------c263_c265g_g267a_c268g_a269g_275cattg279_t281c_a282t_a284t_a286t_c287g_g289a_291---------at301_t306c_t310a_t312a_c315t_g317t_a319g_321agtaaccaa329: a Macaca mulatta IGH V allele sequence, 282 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 282 nt |
| Protein UID i | RHESUS-VP-6VDU2W (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VGY2LZO5W). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV9-OGUP*03_i0aaaa_g1a_g3t_t5g_g6a_c7a_c10a_g12a_g13t_g16c_i17t_20tcat23_g26a_a27t_c33a_g36a_t38a_c40g_g42a_c43t_t45a_g46a_g47t_g49t_g50t_c53t_c54a_t56a_g57a_a58t_a60t_t62c_c63a_c65a_g68-_t69-_79---a82_85caaag89_g104a_g106c_c108a_c111g_t112a_114tcgat118_121aatcc125_c127t_g128a_c129t_g132a_g133a_c134a_c136a_138caatg142_144catcaat150_153catca157_159tcacaga165_t167a_g168t_c174a_g178a_180accctaaaattt191_g193c_c194a_a195t_a197g_t199a_a200c_g202a_c204a_c206a_t208a_t210c_g211c_t212a_a214g_a216t_g220a_a223c_g224a_226--agt230_a232c_t235c_c236t_a240c_t243a_g244a_t246g_t247a_c248a_254---------c263_c265g_g267a_c268g_a269g_275cattg279_t281c_a282t_a284t_a286t_c287g_g289a_291---------at301_t306c_t310a_t312a_c315t_g317t_a319g_321agtaaccaa329 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGCATGGTACTGGCATAAAAACAGACACAGAGATG | MUSA | RHESUS-R3NONY |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGAATGACAAAAACCATTTGATCATTTTGATTGATGCTGAAAAAGTTGAAGAGTACACCCAA | 46 + 17 nt | MUSA | RHESUS-LMRL2C |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VGY2LZO5W/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases