RHESUS-VHGLNOH6R

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalTrue Length317 nt

IGLV9-84*01, IGLV9-LJI51, IGLV4-ACF*04_S7779: a Macaca mulatta IGL V allele sequence, 317 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGL / V
Functional i	True
Length	317 nt
Protein UID i	RHESUS-VP-FDL3WF (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

317 nt

CAGCCTGTGCTGACTCAGCCATCCTCTGCATCGGCCTCCCTGGGAGCCTCGGTCACACTCACCTGCACCCTGAGTAGCGGCTACAGTAATTATGCGGTGGACTGGCACCAGCAGAGACCAGGGAAGGGCCCTCAGTTTGTGATGCGAGTGGGCACAGGTGGGATTGTGGGATCCAAGGGGGATGGCATCCCTGATCGCTTCTCAGGCTCGGGCTCCGGCCTGAATCGGTACCTGACCATCAAGAACATTCAGGAAGAGGATGAGAGTGACTACCACTGTGGGGCAGACCACGGCACTGGGAGCAGCTTCGTGTAACC

Amino-acid sequence (V-REGION)

105 aa

QPVLTQPSSASASLGASVTLTCTLSSGYSNYAVDWHQQRPGKGPQFVMRVGTGGIVGSKGDGIPDRFSGSGSGLNRYLTIKNIQEEDESDYHCGADHGTGSSFV*

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: formerly IGLV9-1*01 (to 2015-03-19);

Allele names i

Every name below denotes this exact sequence (RHESUS-VHGLNOH6R). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGLV9-84*01, IGLV9-LJI51, IGLV4-ACF*04_S7779. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGLV9-DGNA*01	IgLabel	MUSA, OGRDB
IGLV9-84*01	IMGT	IMGT
IGLV9-LJI51	RhGLDB+	RhGLDB+
IGLV4-ACF*04_S7779	VRC	VRC

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
BK063717.1	NCBI accession	ncbi_nucleotide

Former IMGT names i

Former name	Last seen in IMGT release
*IGLV9-101**	2015-03-19

External records i

genbank:IMGT000062: GENBANK:IMGT000062 NCBI nucleotide: link GenBank: GENBANK:BK063717 GenBank: GENBANK:BK063717.1 IMGT: IGLV9-84*01 OGRDB: IGLV9-DGNA*01

Literature references 6 total · 3 verified · 1 sequence-in-paper · 2 name-mentioned* i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
31080066		verified	MUSA
34875068		verified	ncbi_nucleotide
35335026		verified	ncbi_nucleotide
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp
28813462	A comprehensive profiling of T- and B-lymphocyte receptor repertoires from a Chinese-origin rhesus macaque by high-throughput sequencing.	name mentioned^*	literature_supp
38707998	Maintenance of caecal homeostasis by diverse adaptive immune cells in the rhesus macaque.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, MUSA, OGRDB, RhGLDB+, VRC, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGACACAGGCAGAGTGGAAGTGAGACAAAAACC	IMGT MUSA	RHESUS-R2KTSP

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGCCTGGGCTCCTCTGCTCCTCACCCTCCTCAGTCTCCTCACAGGGTCCCTCTCC	46 + 11 nt	IMGT	RHESUS-LJ4P4T
ATGGCCTGGGCTCCTCTGCTCCTCACCCTCCTCAGTCTCCTCACAGGTGGTCCCTCTCC	48 + 11 nt	MUSA	RHESUS-LNW37R

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VHGLNOH6R/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases