RHESUS-VI5IGXKOU

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length293 nt

IGHV3S40*01, IGHV3-ADW*01: a Macaca mulatta IGH V allele sequence, 293 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	293 nt
Protein UID i	RHESUS-VP-L5IFXC (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

293 nt

GAGGTGCAGCGGGTGGAGTCTGGGGGAGGCTTGGTGCAACCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCATCAGTAGCTCCTGGATGAACTGGGACTTCCAGGCTCCAGGAAAGGGGCTGGAGTGTGTCTCACATATTAGTAGTGGTGTTAGCACAGACTACCCAGATTCTATCAAGGGCCAATTCACCATCTCCAGAGACAATACCGAGACCATGCTGTATGTGCAAATGAACAGCCTGAGAGCTGAGGACATGGCTGTGAATTACTGTGCAAGAGA

Amino-acid sequence (V-REGION)

97 aa

EVQRVESGGGLVQPGGSLRLSCAASGFTISSSWMNWDFQAPGKGLECVSHISSGVSTDYPDSIKGQFTISRDNTETMLYVQMNSLRAEDMAVNYCAR

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (RHESUS-VI5IGXKOU). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV3S40*01, IGHV3-ADW*01. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV3-6MZB*01	IgLabel	MUSA
IGHV3-SOZS*02	IgLabel	OGRDB
IGHV3S40*01	IMGT	IMGT
IGHV3-ADW*01	RhGLDB+	RhGLDB+

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
NW_001149609.1	NCBI accession	ncbi_nucleotide

External records i

genbank:MF989480: GENBANK:MF989480 NCBI nucleotide: link NCBI Gene: NCBIGENE:100431054 GenBank: GENBANK:NW_001149609 IMGT: IGHV3S40*01 OGRDB: IGHV3-SOZS*02

Literature references 3 total · 2 verified · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
25858157		verified	MUSA
29163486		verified	MUSA
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp

Contributed by IMGT, MUSA, OGRDB, RhGLDB+, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGAGAGGAAGGCAGTGTGAGCCCAGACACAAACC	IMGT MUSA	RHESUS-RL3OMS

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGAAATGACATTGATACTACATACCCTGCTTTCTCTGCATCTGTGTGTCCGGTGT	46 + 11 nt	MUSA	RHESUS-L7TWO6
ATGGAGTCGTGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTGAAAGGTGTGTCCGGTGT	48 + 11 nt	MUSA	RHESUS-LAILXC
ATGGAGTCGTGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTGAAAGGTGTCCGGTGT	46 + 11 nt	IMGT	RHESUS-LF4527

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VI5IGXKOU/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases