RHESUS-VIINO3B4H
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-3PEF*19_g1a_g4t_6--ta9_t11c_g13a_i20ag_t21a_g24a_g26t_c27a_g31a_g32a_t34a_g36t_c38t_a40c_c44g_t45c_g46a_g48c_g51t_c54t_g57c_g70a_c71a_g80a_a81t_t82g_c87t_c90t_g104c_a107g_t112a_a113g_g118a_a119g_g122t_g128a_c129g_c136t_g139t_g141a_a142c_g147a_c148t_g150a_a152t_c159a_t160g_163acag166_t168g_a172g_g175c_g176a_t177a_i178t_t186g_188agtt191_a193t_t196g_200tactttc206_208atgagt213_a215c_g216a_g220a_g224a_c228a_c231a_a232g_t235c_c237a_a240c_g241a_g243c_a245g_g247c_c248t_a250t_a251c_g252a_a254g_c255t_a256g_c259g_t264c_c268a_a275c_g278a_c280t_t281c_g282c_g284a_t288c_g289a_g292a_c296a_g301t_307--------------320: a Macaca mulatta IGH V allele sequence, 283 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 283 nt |
| Protein UID i | RHESUS-VP-GKI7MG (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VIINO3B4H). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-3PEF*19_g1a_g4t_6--ta9_t11c_g13a_i20ag_t21a_g24a_g26t_c27a_g31a_g32a_t34a_g36t_c38t_a40c_c44g_t45c_g46a_g48c_g51t_c54t_g57c_g70a_c71a_g80a_a81t_t82g_c87t_c90t_g104c_a107g_t112a_a113g_g118a_a119g_g122t_g128a_c129g_c136t_g139t_g141a_a142c_g147a_c148t_g150a_a152t_c159a_t160g_163acag166_t168g_a172g_g175c_g176a_t177a_i178t_t186g_188agtt191_a193t_t196g_200tactttc206_208atgagt213_a215c_g216a_g220a_g224a_c228a_c231a_a232g_t235c_c237a_a240c_g241a_g243c_a245g_g247c_c248t_a250t_a251c_g252a_a254g_c255t_a256g_c259g_t264c_c268a_a275c_g278a_c280t_t281c_g282c_g284a_t288c_g289a_g292a_c296a_g301t_307--------------320 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | TACTGTGAGGGACACAGGAGCGGGAACATTTGCATGAGCC | MUSA | RHESUS-RTHJJA |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGGGTCTGCACTGATCTGGGATTCCCTTCTCATCTCCCTCAGCATCACATAAGTCCTGTTG | 46 + 17 nt | MUSA | RHESUS-LG3ZIC |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VIINO3B4H/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases