RHESUS-VIKUV7EMP

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length296 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	296 nt
Protein UID i	RHESUS-VP-RCWS44 (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VIKUV7EMP). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV3-NL_1*01_S9854, IGHV3-AEW*01_S9854. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV3-2VS2*08	IgLabel	MUSA
IGHV3-BZMP*06	IgLabel	OGRDB
IGHV3-NL_1*01_S9854	KIMDB	KIMDB
IGHV3-AEW*01_S9854	RhGLDB+	RhGLDB+

External records i

OGRDB: IGHV3-BZMP*06

Literature references 1 total · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
39068149	Multi-compartmental diversification of neutralizing antibody lineages dissected in SARS-CoV-2 spike-immunized macaques.	sequence in paper	literature_supp

Contributed by KIMDB, MUSA, OGRDB, RhGLDB+. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGAGGCGAGGTCAGTGCGAGCCCAGACACAAACC	MUSA	RHESUS-RBM3DW

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGAGTTGGGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTGTCCAGTGT	48 + 11 nt	MUSA	RHESUS-L23YQR

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VIKUV7EMP/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

296 nt

GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTACGGCATGAGCTGGGTCCGCCAGGCTCCGGGAAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTGCTAGTAGTTACATATACTACGCTGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCGCTGTCTCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTACTAGTGA

Amino-acid sequence (V-REGION)

98 aa

EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYGMSWVRQAPGKGLEWVSSISSASSYIYYADSVKGRFTISRDNAKNSLSLQMNSLRAEDTAVYYCTS

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases