RHESUS-VIVY6N54X

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalFalse Length311 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGL / V
Functional i	False
Length	311 nt
Protein UID i	RHESUS-VP-JMTJSG (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VIVY6N54X). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGLV5-79*01, IGLV5-3RO5*05_t67c_g190t_c236g_a249g_g252c_c257-_a258g_c268t. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGLV27-DLKC*04	IgLabel	OGRDB
IGLV5-79*01	IMGT	IMGT
IGLV5-3RO5*05_t67c_g190t_c236g_a249g_g252c_c257-_a258g_c268t	VDJbase	MUSA

Former IMGT names i

Former name	Last seen in IMGT release
*IGLV5-1201**	2020-01-31

External records i

IMGT: IGLV5-79*01 OGRDB: IGLV27-DLKC*04

Literature references 1 total · 1 name-mentioned* i

PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
33180672	Hiding in plain sight: structure and sequence analysis reveals the importance of the antibody DE loop for antibody-antigen binding.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, MUSA, OGRDB. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGACACACACAGATGGGGAAGTGGGACAAAATCT	IMGT MUSA	RHESUS-RMGIXV

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGCCTGGACTCCTCTCCTCCTCCTGCTCCTCTCTCACTGCACAGGTGTTCCCTCTCC	48 + 11 nt	MUSA	RHESUS-LIZA2E
ATGGCCTGGACTCCTCTCCTCCTCCTGCTCCTCTCTCACTGCACAGGTTCCCTCTCC	46 + 11 nt	IMGT	RHESUS-LTA34G

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VIVY6N54X/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

311 nt

CAGCCTATGCTGACTCAGCCGGCCTCCCTCTCAGCATCTCCTGGAGCATCAGCCAGTCTCACACGCACCTTCAGCGGTGGCATCAATGTTGCTGGCTACCACATACACTGGTACCAGCAGAAGCCAGGGAGTCCTCCCCGGTATCTTCTGAGATACAAATCAGACTCATATAAGGGCCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATGCAAAGATGCTTCGGCCAACAGGGGATTTTATGCATCTCTGGGCTCCAGTCTGAGGATGAGGCTGACTATTACTGTGCCATTGGGCACAGCAGCGGTCCT

Amino-acid sequence (V-REGION)

103 aa

QPMLTQPASLSASPGASASLTRTFSGGINVAGYHIHWYQQKPGSPPRYLLRYKSDSYKGQGSGVPSRFSGCKDASANRGFYASLGSSLRMRLTITVPLGTAAV

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases