AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RHESUS-VIY25MPU4

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalTrue Length299 nt
SpeciesMacaca mulatta (NCBITAXON:9544)
Locus / typeIGL / V
Functional iTrue
Length299 nt
Protein UID iRHESUS-VP-JGFFV5 (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VIY25MPU4). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGLV6-T6U4*10 IgLabel OGRDB
IGLV6-7SYV*03_t162c_a168t_a193g_t227c VDJbase MUSA

External records i

OGRDB: IGLV6-T6U4*10

Contributed by MUSA, OGRDB. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGCTCCAGCCTCATGGGGAAGTGAGACAAAATCT MUSA RHESUS-RQPHKI

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGGCCTGGGCTCCACTCCTCCTCACCCTCCTCGCTCACTGCACAGGTGGTCTTGGGCT 48 + 11 nt MUSA RHESUS-L44AIK

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VIY25MPU4/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

299 nt
GAGGTTGTGTTCACTCAGCCCCATTCTGTGTCGGGGTCTCCGGGGCAGACGGTCACCATCTCCTGCACCCGCAGCAGTGGCAGCATTGGCAGCAGCTATGTGTACTGGTACCAGCAGCGGCCGGGCAGCGCCCCCACCACTGTGATCTACAATGATGACCAAAGACCCTCTGGGGTCCCTGATCGGTCCTCTGGCTCCATCGACAGCTCCTCCAACTCTGCCTCCCTCACCATCTCTGGACTGAAGTCTGAGGACGAGGCTGACTATTACTGTCAGTCTTATGACAGCAGCAGTTATCA

Amino-acid sequence (V-REGION)

99 aa
EVVFTQPHSVSGSPGQTVTISCTRSSGSIGSSYVYWYQQRPGSAPTTVIYNDDQRPSGVPDRSSGSIDSSSNSASLTISGLKSEDEADYYCQSYDSSSY

Translated here from the nucleotide sequence; no source published a protein for this allele. i