RHESUS-VKC2O7GAV
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-2JI5*18_g3a_7--tg10_12ttctc16_20gcact24_c26t_a27t_a33c_g37a_t45c_g48a_g49c_g57c_c69t_g70t_t72c_g73a_80catt83_i89cacaac_c105t_g107c_a110c_a113g_g128a_c129t_i133g_t154c_g156a_t159c_g160a_g163t_t165c_t167c_c168a_g172c_g175-_g176-_t177-_a184-_t186a_c192t_a193g_c195a_g196c_a200c_c207a_t208c_c209t_a214-_g224c_t234c_a237c_g241t_a242c_g246a_g252a_c255a_a257g_g258t_c263t_g267a_a268c_c278a_t279c_g280c_c284g_g286a_c287a_c288a_c290a_g292t_g297a_g298a_c299g_g301a_t302a_t304a_a308t_c309t_g311a_g315c_g317a_a320t: a Macaca mulatta IGH V allele sequence, 296 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 296 nt |
| Protein UID i | RHESUS-VP-RGBPKC (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VKC2O7GAV). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-2JI5*18_g3a_7--tg10_12ttctc16_20gcact24_c26t_a27t_a33c_g37a_t45c_g48a_g49c_g57c_c69t_g70t_t72c_g73a_80catt83_i89cacaac_c105t_g107c_a110c_a113g_g128a_c129t_i133g_t154c_g156a_t159c_g160a_g163t_t165c_t167c_c168a_g172c_g175-_g176-_t177-_a184-_t186a_c192t_a193g_c195a_g196c_a200c_c207a_t208c_c209t_a214-_g224c_t234c_a237c_g241t_a242c_g246a_g252a_c255a_a257g_g258t_c263t_g267a_a268c_c278a_t279c_g280c_c284g_g286a_c287a_c288a_c290a_g292t_g297a_g298a_c299g_g301a_t302a_t304a_a308t_c309t_g311a_g315c_g317a_a320t | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGCGAGGGAAAGACATTGTGAGCCCAGACAAACCTC | MUSA | RHESUS-RDTM4U |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGCCCATTATCCTGACAGCAGTTGCTCTTCCTTATTTGGTTGAAAGAACCTGTGCATGCCAA | 46 + 17 nt | MUSA | RHESUS-LFZAVY |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VKC2O7GAV/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases