RHESUS-VLA5SOOBA

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalTrue Length297 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGL / V
Functional i	True
Length	297 nt
Protein UID i	RHESUS-VP-FQ2MRV (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VLA5SOOBA). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGLV2-19*03, IGLV2-ABJ*01_S9052. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGLV2-OLTR*01	IgLabel	MUSA, OGRDB
IGLV2-19*03	IMGT	IMGT
IGLV2-ABJ*01_S9052	RhGLDB+	RhGLDB+
IGLV2-ABJ*01_S9052	VRC	VRC

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
AM055981.1	NCBI accession	ncbi_nucleotide

External records i

genbank:AM055981: GENBANK:AM055981 NCBI nucleotide: link GenBank: GENBANK:AM055981 GenBank: GENBANK:AM055981.1 IMGT: IGLV2-19*03 OGRDB: IGLV2-OLTR*01

Literature references 3 total · 1 verified · 1 sequence-in-paper · 1 name-mentioned* i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
16189671		verified	ncbi_nucleotide
39068149	Multi-compartmental diversification of neutralizing antibody lineages dissected in SARS-CoV-2 spike-immunized macaques.	sequence in paper	literature_supp
39341987	Full-length single-cell BCR sequencing paired with RNA sequencing reveals convergent responses to pneumococcal vaccination.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, MUSA, OGRDB, RhGLDB+, VRC, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGGTCCAAGTTCATGGGGAACTGAGACCAAAACC	MUSA	RHESUS-RUYNCC

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ACCCTCCTCACTCAGGGCACAGGATCCTGGGCT	22 + 11 nt	IMGT	RHESUS-L455YO
ATGGTCTGGGCTCTGCTCCTCCTCACCCTCCTCACTCAGGGCACAGGTGATCCTGGGCT	48 + 11 nt	MUSA	RHESUS-LY7XEB

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VLA5SOOBA/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

297 nt

CAGGCTGCCCCGACTCAGCCTCCCTCTGTGTCCGGGTCTCCTGGACAGTCGGTCACCATCTCCTGCACTGGAACCAGCAGTGATATTGGGTATTATAATGCTGTGTCTTGGTACCAACAGCATCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCTCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACACTTTC

Amino-acid sequence (V-REGION)

99 aa

QAAPTQPPSVSGSPGQSVTISCTGTSSDIGYYNAVSWYQQHPGKAPKLMIYEVSKRPSGVSDRFSGSKSGNTASLTISGLQAEDEADYYCSSYAGSNTF

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases