RHESUS-VLLEZAMG5

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length302 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	302 nt
Protein UID i	RHESUS-VP-C2WGBD (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VLLEZAMG5). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV3-187*01_S1133, IGHV3-ACZ*01. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV9-2BCH*19	IgLabel	MUSA
IGHV9-GESA*09	IgLabel	OGRDB
IGHV3-187*01_S1133	KIMDB	KIMDB
IGHV3-ACZ*01	RhGLDB+	RhGLDB+

External records i

genbank:MF989451: GENBANK:MF989451 OGRDB: IGHV9-GESA*09

Literature references 4 total · 1 verified · 2 sequence-in-paper · 1 name-mentioned* i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
29163486		verified	MUSA
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp
35419009	Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque.	sequence in paper	literature_supp
38042809	Interaction dynamics between innate and adaptive immune cells responding to SARS-CoV-2 vaccination in non-human primates.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by KIMDB, MUSA, OGRDB, RhGLDB+. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGAGGCGAGGTCAATGTGAGCCCAGACACAAACC	MUSA	RHESUS-RY7AZS

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGAGTTGGGGCTGAGCTGGGTTTTCCTTGTTGCTCTTTTAAAAGGTGTGTGCAGTGT	48 + 11 nt	MUSA	RHESUS-LXYHHQ

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VLLEZAMG5/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

302 nt

GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGTTCCCTGAGACTCTCCTGTGCAGCCTCCGGATTCACCTTTAGTAACTACTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGATTTATTAAAAACAAAGCCGATGGTGGAACAGCAGCATACGCCGAATCTGTGAAAGGCAGATTCACTATCTCAAGAGATGATTCAAAGAACACACTGTACCTGCAAATGAACAGCCTGAAAACCGAGGACACGGCCGTGTATTACTGTGCTAGAGA

Amino-acid sequence (V-REGION)

100 aa

EVQLVESGGGLVQPGGSLRLSCAASGFTFSNYWMSWVRQAPGKGLEWVGFIKNKADGGTAAYAESVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCAR

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases