AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RHESUS-VLZS6U54E

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalFalse Length310 nt
SpeciesMacaca mulatta (NCBITAXON:9544)
Locus / typeIGL / V
Functional iFalse
Length310 nt
Protein UID iRHESUS-VP-UIUMMI (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VLZS6U54E). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGLV24-PJEQ*01_105-------111_c118t_g119t_g120c_a129g_a132g VDJbase MUSA

Contributed by MUSA. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGCTCCAGACCCATGAGGAAGTCAGACAAAAACC MUSA RHESUS-RJJYSU

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGGCCTGGACTCTTCTCCTTCTCATGCTCCTCTCTCACTGCACAGGTGTTCCCTCTCC 48 + 11 nt MUSA RHESUS-LOO6TB

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VLZS6U54E/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

310 nt
CAGCCTGTGCTGACTCAGCCATCTTCCCATTCCGCATCTCCTGGAGCGCCAGCCAGACTCACCTGCACGCTGAGCAGTGGCTTCAGTGTTGGTGGATATTCTGGTACCAGCAGAAGCCAGGGAGCCCTCCCCGGTATCTCCTGTACTACCACTCAGACTCAGATAAGCACCAAGGCTCTGGAGTTCCCAGCCGCTTCTCTGGATCCAATGATGCATCAGCCAATGCAGGGATTCTGCATATCTCTGGGCTCCAGCCTGAGGATGAGGCTGACTATTACTGTTGTACATGGCATGGCAACTCTAAGACTCA

Amino-acid sequence (V-REGION)

103 aa
QPVLTQPSSHSASPGAPARLTCTLSSGFSVGGYSGTSRSQGALPGISCTTTQTQISTKALEFPAASLDPMMHQPMQGFCISLGSSLRMRLTITVVHGMATLRL

Translated here from the nucleotide sequence; no source published a protein for this allele. i