AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RHESUS-VM2CXW4NQ

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalNone Length290 nt
SpeciesMacaca mulatta (NCBITAXON:9544)
Locus / typeIGH / V
Functional iNone
Length290 nt
Protein UID iRHESUS-VP-MLU7CT (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VM2CXW4NQ). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGHV4-165*04 IMGT IMGT

External records i

IMGT: IGHV4-165*04

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGAGGGGAGGTGAGTGTGAGCCCAGACACAAACC IMGT RHESUS-RXT2LD

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGAAGCACCTGTGGTTCTTCCTCCTCCTGGTGGCAGCTCCCAGATGGGTCTGTCC 46 + 10 nt IMGT RHESUS-L25CBG

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VM2CXW4NQ/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

290 nt
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCGATTACTACTGGAACTGGATCCGCCAACCCCCAGGGAAGGGGCTGGAGTGGATTGGGTATATCGGTAGTAGTGGAGCACCTACTACAACCCCTCCCTCAAGAGTCGAGTCACCATTTCAACGGACACGTCCAAGAACCAGTTCTCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGCCGTGTATTACTGTGCGAGAGA

Amino-acid sequence (V-REGION)

96 aa
QVQLQESGPGLVKPSETLSLTCAVSGGSISDYYWNWIRQPPGKGLEWIGYIGSSGAPTTTPPSRVESPFQRTRPRTSSPEAELCDRRGHAVYYCAR

Translated here from the nucleotide sequence; no source published a protein for this allele. i