RHESUS-VN2QI2NMI

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length296 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	296 nt
Protein UID i	RHESUS-VP-WVQK4W (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VN2QI2NMI). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV1-111*04, IGHV1-84*01_S4663. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV1-2OLR*05	IgLabel	MUSA
IGHV1-ISRF*13	IgLabel	OGRDB
IGHV1-111*04	IMGT	IMGT
IGHV1-84*01_S4663	KIMDB	KIMDB

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
MT542446.1	NCBI accession	ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:MT542446 GenBank: GENBANK:MT542446.1 IMGT: IGHV1-111*04 OGRDB: IGHV1-ISRF*13

Literature references 2 total · 1 verified · 1 name-mentioned* i

PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
33484642		verified	ncbi_nucleotide
35419009	Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, KIMDB, MUSA, OGRDB, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGTGAAAACCACATCCTGAGAGTGTCAGAAACC	IMGT MUSA	RHESUS-R64W3P

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACTGGACCTGGAGGCTCCTCCTCTTGGTGGCAGCAGCTACAGGCGCCCACTCC	46 + 11 nt	IMGT	RHESUS-LJPMXB
ATGGACTGGACCTGGAGGCTCCTCCTCTTGGTGGCAGCAGCTACAGGTGCGCCCACTCC	48 + 11 nt	MUSA	RHESUS-LYGHBQ

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VN2QI2NMI/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

296 nt

GAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCCGTGAAAATCTCCTGCAAGGCTTCTGGATACACCTTCACCGACTACTACCTGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGACGTGTTGATCCTGAAGATGGTGAAGCAGACTACGCACAGAAGTTCCAGGACAGAGTCACCATCACCGCGGACACGTCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCATGTATTACTGTGCAACAGA

Amino-acid sequence (V-REGION)

98 aa

EVQLVQSGAEVKKPGASVKISCKASGYTFTDYYLHWVRQAPGKGLEWMGRVDPEDGEADYAQKFQDRVTITADTSTDTAYMELSSLRSEDTAMYYCAT

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases