RHESUS-VOFBDP37A

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length302 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	302 nt
Protein UID i	RHESUS-VP-KNH7P6 (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VOFBDP37A). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV3-NL_12*02_S6994, IGHV3-ADZ*01. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV9-EKCD*05	IgLabel	MUSA
IGHV9-PWAC*02	IgLabel	OGRDB
IGHV3-NL_12*02_S6994	KIMDB	KIMDB
IGHV3-ADZ*01	RhGLDB+	RhGLDB+

External records i

genbank:MF989451: GENBANK:MF989451 OGRDB: IGHV9-PWAC*02

Literature references 3 total · 1 verified · 2 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
29163486		verified	MUSA
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp
35419009	Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque.	sequence in paper	literature_supp

Contributed by KIMDB, MUSA, OGRDB, RhGLDB+. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGAGGGGAGGTCAGTGTGAGCCCAGACACAAACC	MUSA	RHESUS-R6AAZB
v_rs	CTCAGTGAGGGGAGGTCAGTGTGAGCCCAGACACAAACC	MUSA	RHESUS-RHWRZW

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGAGTTTGGGCCGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTGTGCAGTGT	48 + 11 nt	MUSA	RHESUS-LDHYZV

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VOFBDP37A/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

302 nt

GAGATGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGCGGGTCCCTGAGAGTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACCACTACATGGACTGGGTCCGCCAGGCTCCAGGGAAGGGGCCGGAGTGGGTAGGTTTCATTAGAAATAAAGCTAAAGGTGGGACAACAGAATACGCCGCGTCTGTGAAAGGCAGATTCACTATCTCAAGAGATGATTCCAAAAACGTCACCTATCTGCAAATGAACAGCCTGAACACCGAGGACACGGCCGTGTATTACTGCACCACAGA

Amino-acid sequence (V-REGION)

100 aa

EMQLVESGGGLVQPGGSLRVSCAASGFTFSDHYMDWVRQAPGKGPEWVGFIRNKAKGGTTEYAASVKGRFTISRDDSKNVTYLQMNSLNTEDTAVYYCTT

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases