RHESUS-VQCSW6YKE

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalTrue Length312 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGL / V
Functional i	True
Length	312 nt
Protein UID i	RHESUS-VP-LVP53A (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VQCSW6YKE). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGLV5-74*01, IGLV5-LJI61, IGLV5-ABT*01_S4414. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGLV5-K637*01	IgLabel	MUSA
IGLV5-Y6D5*02	IgLabel	OGRDB
IGLV5-74*01	IMGT	IMGT
IGLV5-LJI61	RhGLDB+	RhGLDB+
IGLV5-ABT*01_S4414	VRC	VRC

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
BK063717.1	NCBI accession	ncbi_nucleotide

External records i

genbank:IMGT000062: GENBANK:IMGT000062 NCBI nucleotide: link GenBank: GENBANK:BK063717 GenBank: GENBANK:BK063717.1 IMGT: IGLV5-74*01 OGRDB: IGLV5-Y6D5*02

Literature references 4 total · 3 verified · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
31080066		verified	MUSA
34875068		verified	ncbi_nucleotide
35335026		verified	ncbi_nucleotide
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp

Contributed by IMGT, MUSA, OGRDB, RhGLDB+, VRC, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGACACTCACTGATGGGGAAGTGGGACAAAAACC	IMGT MUSA	RHESUS-RQ55JV

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGCCTGGACTCCTCTCCTCTTCCTGCTCTTCTCTCACTGCACAGGTTCCCTCTCA	46 + 11 nt	IMGT	RHESUS-LJGLKD
ATGGCCTGGACTCCTCTCCTCTTCCTGCTCTTCTCTCACTGCACAGGTGTTCCCTCTCA	48 + 11 nt	MUSA	RHESUS-LS53HG

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VQCSW6YKE/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

312 nt

CAGCCTGTGCTGACTCAGCCAACCTCCCTCTCAGCATCTCCTGGAGCATCAGTCAGACTCACCTGCACCTTGCGCAGTGGCATCAGTGTTGGTGGCTACAATATACACTGGTACCAGCAGAAGCCAAGGAGTCCTCCCCGGTACCTACTGTACTACTACTCAGACTCAAATAAGGGCCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGATGCTTCGGCCAATGCAGGGATTTTACTCATCTCTGGGTTCCAGTCTGAGGATGAGGCTGACTATTACTGTACGACTTGGCACAACAATGCTTCT

Amino-acid sequence (V-REGION)

104 aa

QPVLTQPTSLSASPGASVRLTCTLRSGISVGGYNIHWYQQKPRSPPRYLLYYYSDSNKGQGSGVPSRFSGSKDASANAGILLISGFQSEDEADYYCTTWHNNAS

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases