RHESUS-VQL5HIBNV
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV10-LLQ3*01_i0aaaaa_g1a_g3t_t5g_g6a_c7a_c9g_c10a_g12a_g13t_g16c_i17t_c20t_g22a_g23t_g26a_a27t_c33a_g36a_c38a_a40g_c43t_t45a_g46a_a47t_g49t_a50t_c53t_c54a_t56a_g57a_a58t_a60t_t62c_c63a_c65a_g70c_i72aag_g73c_c74a_c75a_g79a_g83a_a84t_c87g_c89-_c90-_t104g_g107a_a109c_g110c_c114t_t115c_c117a_t119a_g120t_a122c_t124a_g125a_t128a_c130a_g131t_c133a_g135t_137---------145_t147c_g149t_g150c_c151a_g153t_g154c_g156c_t157a_g159a_g160a_t161a_c166a_g169a_t170a_t171a_t174c_183--aatt188_191catgga196_t200a_c203a_t208c_c210a_g213a_a214t_220ccaaag225_229----232_c236t_c237a_a240c_t243a_246---g249_g252c_c255a_a258t_c259g_261aggaa265_c268a_a269c_a271t_a274c_a275c_c276t_278tctgc282_286ttgt289_g291c_a292t_c296g_c299t_c300t_i302a_t304a_t306g_309acca312: a Macaca mulatta IGH V allele sequence, 282 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 282 nt |
| Protein UID i | RHESUS-VP-RJ6YP6 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VQL5HIBNV). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV10-LLQ3*01_i0aaaaa_g1a_g3t_t5g_g6a_c7a_c9g_c10a_g12a_g13t_g16c_i17t_c20t_g22a_g23t_g26a_a27t_c33a_g36a_c38a_a40g_c43t_t45a_g46a_a47t_g49t_a50t_c53t_c54a_t56a_g57a_a58t_a60t_t62c_c63a_c65a_g70c_i72aag_g73c_c74a_c75a_g79a_g83a_a84t_c87g_c89-_c90-_t104g_g107a_a109c_g110c_c114t_t115c_c117a_t119a_g120t_a122c_t124a_g125a_t128a_c130a_g131t_c133a_g135t_137---------145_t147c_g149t_g150c_c151a_g153t_g154c_g156c_t157a_g159a_g160a_t161a_c166a_g169a_t170a_t171a_t174c_183--aatt188_191catgga196_t200a_c203a_t208c_c210a_g213a_a214t_220ccaaag225_229----232_c236t_c237a_a240c_t243a_246---g249_g252c_c255a_a258t_c259g_261aggaa265_c268a_a269c_a271t_a274c_a275c_c276t_278tctgc282_286ttgt289_g291c_a292t_c296g_c299t_c300t_i302a_t304a_t306g_309acca312 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGCATGGTACTGGCATAAAAACAGACACAGAGATG | MUSA | RHESUS-R3NONY |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGAATGACAAAAACCATTTGATCATTTTGATTGATGCTGAAAAAGTTTGAAGAGTACACCAA | 46 + 17 nt | MUSA | RHESUS-LQJIUG |
| ATGGAAAGGAAGAAGTCAAATTATCCTCATTTGCCTATGGTATGATTTTGAAGAGTACACCAA | 46 + 17 nt | MUSA | RHESUS-LY7VTE |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VQL5HIBNV/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases