RHESUS-VSSUN2JDN

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGK TypeV FunctionalTrue Length287 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGK / V
Functional i	True
Length	287 nt
Protein UID i	RHESUS-VP-3AH6QV (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VSSUN2JDN). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGKV1-25EI*04	IgLabel	MUSA
IGKV1-CL4V*12	IgLabel	OGRDB
IGKV1-AAL-S*01_S7871	VRC	VRC

External records i

OGRDB: IGKV1-CL4V*12

Literature references 1 total · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
39068149	Multi-compartmental diversification of neutralizing antibody lineages dissected in SARS-CoV-2 spike-immunized macaques.	sequence in paper	literature_supp

Contributed by MUSA, OGRDB, VRC. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGTTACACACCCGAACATAAACC	MUSA	RHESUS-RI4XC5

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGTGCCAGATGT	57 + 11 nt	MUSA	RHESUS-LJI3XY

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VSSUN2JDN/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

287 nt

GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACACAGTCACCATCACTTGTCGGGCAAGTCAGGGCATTAGCAATTATTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCGAAGCCCCTGATCTATTACGCATCCAATTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAATTTATTACTGTCAACAGCATAATAGTTACCCTCC

Amino-acid sequence (V-REGION)

95 aa

DIQMTQSPSSLSASVGDTVTITCRASQGISNYLAWYQQKPGKAPKPLIYYASNLESGVPSRFSGSGSGTDFTLTISSLQPEDFAIYYCQQHNSYP

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases