RHESUS-VST22ZUPD

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGK TypeV FunctionalTrue Length287 nt

IGKV5-11*01, IGKV5-AEV-X*02_S4217: a Macaca mulatta IGK V allele sequence, 287 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGK / V
Functional i	True
Length	287 nt
Protein UID i	RHESUS-VP-FPCJEK (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

287 nt

GAAACGATACTCACACAGTCTGCGGCATTCATGTCAGCAACTCCAGGAGACAAAGTCACCATCTCCTGCAAAGCCAGCCAAGACATTGATGATGATATGAACTGGTACCAACTGGAACCAGGAGAAGCTCCTAAACTCATTATTAAAGATGCTACTACTCTCGTTTCTGGAATCCCGCCTCGATTCAGTGGCAGCGGGTATGGAACAGATTTTACTCTCACAATTAATAATGTAGAATCTGAGGATGCTGCATATTACTTCTGTCTACAACATGATAATTTCCCTCT

Amino-acid sequence (V-REGION)

95 aa

ETILTQSAAFMSATPGDKVTISCKASQDIDDDMNWYQLEPGEAPKLIIKDATTLVSGIPPRFSGSGYGTDFTLTINNVESEDAAYYFCLQHDNFP

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (RHESUS-VST22ZUPD). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGKV5-11*01, IGKV5-AEV-X*02_S4217. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGKV5-DP4W*02	IgLabel	MUSA
IGKV5-GWIR*03	IgLabel	OGRDB
IGKV5-11*01	IMGT	IMGT
IGKV5-AEV-X*02_S4217	VRC	VRC

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
BK063716.1	NCBI accession	ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:BK063716 IMGT: IGKV5-11*01 OGRDB: IGKV5-GWIR*03

Literature references 2 total · 2 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp
38707998	Maintenance of caecal homeostasis by diverse adaptive immune cells in the rhesus macaque.	sequence in paper	literature_supp

Contributed by IMGT, MUSA, OGRDB, VRC, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGATGCACCCTGTTACAAAAACC	IMGT MUSA	RHESUS-RO25M2

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGGATCCCAGGTTCACCTCCTCAGCTTCCTCCTCCTTTGGATCTCTGATGCCAGGGCA	49 + 11 nt	IMGT	RHESUS-LIKGZS
ATGGGATCCCAGGTTCACCTCCTCAGCTTCCTCCTCCTTTGGATCTCTGGTATGCCAGGGCA	51 + 11 nt	MUSA	RHESUS-LYAO2J

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VST22ZUPD/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases