AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RHESUS-VW57ZO35Y

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGK TypeV FunctionalFalse Length305 nt

IGKV2-5HMW*01_c15a_g18a_c35t_g54a_i59tgt_a61t_t62c_c74g_c87t_t89c_g90a_c91t_t93c_t96g_g104a_t114c_c126t_t157c_g166t_a167t_g168t_c195a_g208c_t216a_a229c_g251a_c277t_g286a_g301a_t310c_g319a_g320a_c325g: a Macaca mulatta IGK V allele sequence, 305 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesMacaca mulatta (NCBITAXON:9544)
Locus / typeIGK / V
Functional iFalse
Length305 nt
Protein UID iRHESUS-VP-A73TKP (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

305 nt
GATATTGTGATGACACAAACTCCACTCTCCCTGCTCGTCACCCCTGGAGAGCCAGCCTCTGTCTCCTCCTGCAGGTGTAGTCAGAGCCTTCCATACAGGGGTGAAAAAACCTACTTGTATTGGTATCTGCAGAAGCCAGGCCAGTCTCCACAGCTCCTGATCTATTTTGTTTCAAACCGGGCCTCTCGAGTCCCAGACAGGTTCCGTGGCAGTGGGTCAGACACTGATTTCACACTGAAAATCAGCTGGGTGGAGACTGAGGATGTTGGGATTTATTACCGCATGCAAAATATAGAGCTTCCTCC

Amino-acid sequence (V-REGION)

101 aa
DIVMTQTPLSLLVTPGEPASVSSCRCSQSLPYRGEKTYLYWYLQKPGQSPQLLIYFVSNRASRVPDRFRGSGSDTDFTLKISWVETEDVGIYYRMQNIELP

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (RHESUS-VW57ZO35Y). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGKV2-5HMW*01_c15a_g18a_c35t_g54a_i59tgt_a61t_t62c_c74g_c87t_t89c_g90a_c91t_t93c_t96g_g104a_t114c_c126t_t157c_g166t_a167t_g168t_c195a_g208c_t216a_a229c_g251a_c277t_g286a_g301a_t310c_g319a_g320a_c325g VDJbase MUSA

Contributed by MUSA. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAATGGCACAGTCCCATAGAGAAACC MUSA RHESUS-RKVDL3

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGCTCCCTGGTGGTCCAGTGGG 51 + 11 nt MUSA RHESUS-LNKL6C

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VW57ZO35Y/similar?min_identity=0.95&kind=nt.