AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RHESUS-VYOGZQYI2

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalTrue Length312 nt
SpeciesMacaca mulatta (NCBITAXON:9544)
Locus / typeIGL / V
Functional iTrue
Length312 nt
Protein UID iRHESUS-VP-6C5J5A (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VYOGZQYI2). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGLV5-NWM6*08 IgLabel OGRDB
IGLV5-276Q*04_c137t_g152a VDJbase MUSA

External records i

OGRDB: IGLV5-NWM6*08

Contributed by MUSA, OGRDB. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGACACACACACATGGGGAAGTGGGACAAAAACC MUSA RHESUS-RJ2WSG

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGGCCTGGACTCCTCTCCTCCTCCTGCTCCTCTCTCACTGCACAGGTGTTCCCTCTCC 48 + 11 nt MUSA RHESUS-LIZA2E

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VYOGZQYI2/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

312 nt
CAGCCTGTGCTGACCCAGCCAACCTCCCTCTCAGCATCTCCGGGAGCATCAGCCAGACTCAGCTGCACCTTGAGCAGTGGCATCAATGTTGGTAGTTACAGCATATTCTGGTACCAGCAGAAGCTAGGGAGTCCTCCCCAGTACCTTCTGTACTACTACTCAGACTCAAGTAAGCACCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGATGCTTCAGCCAATGCAGGGCTTTTACTGATCTCTGGGCTCCAGTCTGAAGATGAGGCTGACTATTACTGTGCCATATGGCACAGCAGCGCTTCT

Amino-acid sequence (V-REGION)

104 aa
QPVLTQPTSLSASPGASARLSCTLSSGINVGSYSIFWYQQKLGSPPQYLLYYYSDSSKHQGSGVPSRFSGSKDASANAGLLLISGLQSEDEADYYCAIWHSSAS

Translated here from the nucleotide sequence; no source published a protein for this allele. i