AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RHESUS-VZB2GAP2H

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGK TypeV FunctionalTrue Length302 nt
SpeciesMacaca mulatta (NCBITAXON:9544)
Locus / typeIGK / V
Functional iTrue
Length302 nt
Protein UID iRHESUS-VP-X4WU2L (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VZB2GAP2H). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGKV2-56CB*04 IgLabel MUSA
IGKV2-LJWZ*03 IgLabel OGRDB
IGKV2-82*03 IMGT IMGT

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

NameKindSource(s)
AY963759.1 NCBI accession ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:AY963759 GenBank: GENBANK:AY963759.1 IMGT: IGKV2-82*03 OGRDB: IGKV2-LJWZ*03

Literature references 1 total · 1 verified i

PubMed publications linked to this allele.

PMIDTitleEvidenceSource
15900492 verified ncbi_nucleotide

Contributed by IMGT, MUSA, OGRDB, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGGTACAGACCCGAACAGAAACC MUSA RHESUS-R4JJYW

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGAGGCTCCCTGCTCAGCTCCTGGGACTGCTAATGCTCTGGGTCCCTGGTGATCCAGTGGG 51 + 11 nt MUSA RHESUS-LT7BJK
GGGACTGCTAATGCTCTGGGTCCCTGGATCCAGTGGG 26 + 11 nt IMGT RHESUS-LTRHIE

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VZB2GAP2H/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

302 nt
GATATTGTGATGATCCAGACTCCACTCTCCCTGCCCGTCACCCTTGGAGAGCCAGCCTCCATCTCCTGCAGGTCCAGTCAGAGCCTTGTATACAGTGATGGAAAAACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGTCTCCACAGCTCCTGATGTATTTGGTTTCCAAACGGGCCTCTGGAGTCCCAGACAAGTTCAGTGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACGGTCTCCTTC

Amino-acid sequence (V-REGION)

100 aa
DIVMIQTPLSLPVTLGEPASISCRSSQSLVYSDGKTYLYWYLQKPGQSPQLLMYLVSKRASGVPDKFSGSGSGTDFTLKISRVEAEDVGVYYCMQALRSP

Published by the source, and consistent with the nucleotide sequence above. i