SALMON-COH3QUJWR

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesSalmo salar LocusIGH TypeC FunctionalTrue Length4947 nt

IGHDD*01: a Salmo salar IGH C allele sequence, 4947 nt, functional. The nucleotide sequence is below, with every recorded name and its source.

Species	Salmo salar (NCBITAXON:8030)
Locus / type	IGH / C
Functional i	True
Length	4947 nt

Coding sequence (nt)

IMGT publishes this constant region as separate domain records, not as one sequence. What is shown here is those domains concatenated in domain order: CH1:339 + CH2:300 + CH2D:300 + CH2D2:300 + CH2D3:300 + CH3:315 + CH3D:315 + CH3D2:315 + CH3D3:315 + CH4:294 + CH4D:294 + CH4D2:294 + CH4D3:294 + CH5:327 + CH6:321 + CH7-CHS:324, which is the secreted form. The membrane-bound form uses different 3' exons and is a separate transcript, not represented here.

4947 nt c_secreted

GTGCAGCGGGTCATTCCTCCAAATATCACCCTGTATCCTCTCTGGGAGGAACTGGAGGGAGGATCGAAGGTGGGACTCCTCTGCATTCTGAGTGGATTCTACCCTGACAAGCTGAGTGTGGAGTGGCTGCTGGATGACAAAACTGCGACCACCTCTCCAGTCCAGCGGAAGCTGCAGAGTGTAGAAGGTGAGGAGAAAACTTTCAGCCTGAACAGCCAGCTGGAGCTGGACCAGGGCCAATGGACTCAAGGGTCAGAGGTCACATGCAAGGCCACCCACAATGCAGCACAAGGACCACCTCCAGGAACAACAGTCTCCAGGACCATTAGCATTTGCTCAGCTTTTCCCTCGTCTACTCCATCCATCCACCTGGAGACCCCCAGGTTCAGGACAGTGATGACACAGACTGAGGTAACAGCTACATGTGTGGTCCACTCTGCGTATGACGCCAAAGTGGCCTGGCTTCTGGATGGAAAGGACCCAACCAGCAGGACCCCAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACCCTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACCGCACACAGAGGACCAGCAATGTTAAAGCTTTTCCCTCGTCTACTCCATCCCTCCACCTGGAGACCCCCAGATTCATGACAGTGATGACACAGACTGAGGTAACAGCTACATGTGTGGTCCACTCTGCGTATGACGCCAAAGTGTCCTGGCTTCTGGATGGAAAAGACCCAACCAGCAGGACCCCAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACCCTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACCGCACACAGAGGACCAGCAATGTTAAAGCTTTTCCCTCGTCTACTCCATCCCTCCACCTGGAGACCCCCAGATTCATGACAGTGATGACACAGACTGAGGTAACAGCTACATGTGTGGTCCACTCTGCGTATGACGCCAAAGTGTCCTGGCTTCTGGATGGAAAAGACCCAACCAGCAGGACCCCAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACCCTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACCGCACACAGAGGACCAGCAATGTTAAAGCTTTTCCCTCGTCTACTCCATCCATCCACCTGGAGACCCCCAGGTTCAGGACAGTGATGACACAGACTGAGGTAACAGCTACATGTGTGGTCCACTCTGCGTATGACACCAAAGTGTCCTGGCTTCTGGATGGAAAAGACCCAACCAGCAGGACCCCAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACCCTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACCGCACACAGAGGACCAGCAATGTTAAAGGACCTGCAGTGAGCAGCACTCCCACAGTTCTGATCAGGAGGTCTCTCCCAGACTTACTGGATGGAGACAGTGCTGTGCTGGAGTGTGCCATCACACAACTCTCCTCCAGTGACATCTACGTCACCTTTCAGGCCAATGGGGTTGATTTCCCTGAGAAACAGTATGTTGATCTGCCTGCCTCCAAAGACCACCATTCACTCACCAGACGGTTCTCTATACCCACATCACACTGGAAGAAAGACAACACTTTCACCTGTAAAGTGAACCAAGGCTACTCCAACAGCTGGGTGTCTAACTCCACAGGAACACTTTTTGGACCTGCAGTGAGCAGCACTCCCACAGTTTTGATCAGGAGGTCTCTCCCAGACTTACTGGATGGAGACAGTGCTGTGCTGGAGTGTGCCATCACACAACTCTCCTCCAGTGACATCTACGTCACCTTTCAGGCCAATGGGGTTGATTTCCCTGAGAAACAGTATGTTGATCTGCCTGCCTCCAAAGACCACCATTCACTCACCAGACGGTTCTCTATACCCACATCACACTGGAAGAAAGACAACACTTTCACCTGTAAAGTGAACCAAGGCTACTCCAACAGCTGGGTGTCTAACTCCACAGGAACACTTTTTGGACCTGCAGTGAGCAGCACTCCCACAGTTCTGATCAGGAGGTCTCTCCCAGACTTACTGGATGGAGACAGTGCTGTGCTGGAGTGTGCCATCACACAACTCTCCTCCAGTGACCTCTACGTCACCTTTCAGGCCAATGGTGTTGATTTCCCTGAGAAACAGTATGTTGATCTGCCTGCCTCCAAAGACCACCATTCACTCACCAGACGGTTCTCTATACCCACATCACACTGGAAGAAAGACAACACTTTCACCTGTAAAGTGAACCAAGGCTACTCCAACAGCTGGGTGTCTAACTCCACAGGAACACTTTTTGGACCTGCAGTGAGCAGCACTCCCACAGTTCTGATCAGGAGGTCTCTCCCAGACTTACTGGATGGAGACAGTGCTGTGCTGGAGTGTGCCATCACACAACTCTCCTCCAGTGACCTCTACGTCACCTTTCAGGCCAATGGGGTTGATTTCCCTGAGAAACAGTATGTTGATCTGCCTGCCTCCAAAGACCACCATTCACTCACCAGACGGTTCTCTATACCCACATCACACTGGAAGAAAGACAACACTTTCACCTGTAAAGTCAACCAAGGCTACTCCAACAGCTGGGTGTCTAACTCCACAGGAACACTTTTTGGTGAACCGTCCATGGAACTCCTTCTAGTCCCCAATGAGGAGCTGTCAGGCTCAGGGACCCAGAAACTCATGTGTTCTGGGCGGGGCTTCAACCCTCAGATCAAGTGGCTGTCTGGATCTAATCAGAGGTCTGCAGCAGACAATGAGAGAAGGATGAGGGAAGACGGACATGTGGCAGTAACCAGTCATATCACAGTAACACAGCAGGAGTGGAATGAGGGGAAGGACTTCATCTGTGAGGTCATAGACAAAGATCTTCAGAAAACTGTCAGGAAGAGCACCAGTTTATGCACAGGTGAACCGTCCATGGAACTTTTTCTAGTCCCCAATGAGGAGCTGTCAGGCTCAGGGACCCAGAAACTCATGTGTTCTGGGCGGGGCTTCAACCCTCAGATCAAGTGGCTGTCTGGATCTAATCAGAGGTCTGCAGCAGACAATGAGAGAAGGATGAGGGAAGACGGACATGTGGCAGTAACCAGTCATATCACAGTAACACAGCAGGAGTGGAATGAGGGGAAGGACTTCATCTGTGAGGTCATAGACAAAGATCTTCAGAAAACTGTCAGGAAGAGCACCAGTTTATGCACAGGTGAACCGTCCATGGAACTCCTTCTAGTCCCCAATGAGGAGCTGTCAGGCTCAGGGACCCAGAAACTCATGTGTTCTGGGCGGGGCTTCAACCCTCAGATCAAGTGGCTGTCTGGATCTAATCAGAGGTCTGCAGCAGACAATGAGAGAAGGATGAGGGAAGACGGACATGTGGCAGTAACCAGTCATATCACAGTAACACAGCAGGAGTGGAATGAGGGGAAGGACTTCATCTGTGAGGTCATAGACAAAGATCTTCAGAAAACTGTCAGGAAGAGCACCAGTTTATGCACAGGTGAACCGTCCATGGAACTCCTTCTAGTCCCCAATGAGGAGCTGTCAGGCTCAGGGACCCAGAAACTCATGTGTTCTGGGCGGGGCTTCAACCCTCAGATCAAGTGGCTCTCTGTGTCTGCAGCAGCCTATGAGATTAGGATGGGGGAAGACGAACGTGTGGCAGTAACCAGTCATATCACAGTAACACAGCAGGAGTGGAACCAGGGGAAGAACTTCACCTGTGAGGTCATCGACAAGTATCTTCAGAAAGAGGATCTTCAGAAAGTCAGAAAGAGCATCAATATATGTGCAGTGACTCCAATATCGTCTCAGAAAGTGGGGGTGTACCTACAGGGACCCACTCTTCAGGAGCTGAGGACAGGTGGACAGGTGCCTGTCACCTGCCTGCTGGTGGGTCCCAGCCTTGGGGACTTTTCTGTCAGCTGGAAGGTGGATGGGTTTGTGGCTTCTCAAGGTGGGGTCACACGGGCCCCAAAGGACCATTCCAATGGGACACAGACTGAGCAGATCATGTTTAATGTGTCTGCGAGGGATTGGCATGCACACAAACTTGTGTCTTGTGAGGTGAAGCACCGCTGCTCCAGCCAAGCCCAGGTGGAGCATATCACCAAATGCAGAGATCCCAAGCCACCCTCTATAAAGATAGTGAGACCATCAGATTCTGATCTATGGGGGTCAAATAATGCCACACTGCTTTGCTTGGTGTCTGGGTTCTTCCCCTCTGATGTAATAGTGAATTGGGAGAAGGCCGGCAGTCGTCTACCTTTTTCGCGCTACTCCAGTATCCCATCATTCCTTTATGCAGGGAGCAGCACCTACTCCATGAACAGTAGACTCATCGTGCCCAGGTCCGAGTGGGATCAGAACTCCAATTACTCATGTGCTGTCAGACACGAGTCCTCCGAGAGACCTATCACCCACACAATAGAGAATGTATTTGGCTCAGTGACCCCCTCTGCACCAACAGCAACCCTGCTCCAGGGTCCCAGTGAGCTCGTCTGCCTGGTGCTTGGCTTCAGCCCTTCGGACATCAACATCACCTGGCTGCTGGACAACGTCACAGAGCTGTGGAACAACAACACTAGCACCACCTACAGGGCACCAGGAGGAAAGTTTGGCATCAGGAGCCACCTGAGCCTGGCACACCAGGACTGGACACCGGGGGCTGTTTACACCTGCAGGGTGACCCACACCACCCAGACTCTGGCCCTGAACATATCCAAACCAGGTGTCTGTCTGTCAGTTCACTCAATTCTGATACAA

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (SALMON-COH3QUJWR). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHDD*01	IMGT	IMGT

External records i

IMGT: IGHDD*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/SALMON-COH3QUJWR/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases