SALMON-CWHWQTE5Y

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesSalmo salar LocusIGH TypeC FunctionalTrue Length3129 nt

IGHDD*02: a Salmo salar IGH C allele sequence, 3129 nt, functional. The nucleotide sequence is below, with every recorded name and its source.

Species	Salmo salar (NCBITAXON:8030)
Locus / type	IGH / C
Functional i	True
Length	3129 nt · contains ambiguity

Coding sequence (nt)

IMGT publishes this constant region as separate domain records, not as one sequence. What is shown here is those domains concatenated in domain order: CH1:339 + CH2:300 + CH2D3:300 + CH3:315 + CH3D3:315 + CH4:294 + CH4D3:294 + CH5:327 + CH6:321 + CH7-CHS:324, which is the secreted form. The membrane-bound form uses different 3' exons and is a separate transcript, not represented here.

3129 nt c_secreted

NTGCAGCGGGTCATTCCTCCAAATATCACCCTGTATCCTCTCTGGGAGGAACTGGAGGGAGGATCGAAGGTGGGACTCCTCTGCATTCTGAGTGGATTCTACCCTGACAAGCTGAGTGTGGAGTGGCTGCTGGATGACAAAACTGCGACCACCTCTCCAGTCCAGCGGAAGCTGCAGAGTGTAGAAGGTGAGGAGAAAACTTTCAGCCTGAACAGCCAGCTGGAGCTGGACCAGGGCCAATGGACTCAAGGGTCAGAGGTCACATGCAAGGCCACCCACAATGCAGCACAAGGACCACCTCCAGGAACAACAGTCTCCAGGACCATTAGCATTTGCTCAGCTTTTCCCTCGTCTACTCCATCCATCCACCTGGAGACCCCCAGGTTCAGGACAGTGATGACACAGACTGAGGTAACAGCTACATGTGTGGTCCACTCTGCGTATGACGCCAAAGTGGCCTGGCTTCTGGATGGAAAGGACCCAACCAGCAGGACCCCAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACCCTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACCGCACACAGAGGACCAGCAATGTTAAAGCTTTTCCCTCGTCTACTCCATCCATCCACCTGGAGACCCCCAGGTTCAGGACAGTGATGACACAGACTGAGGTAACAGCTACATGTGTGGTCCACTCTGCGTATGACACCAAAGTGTCCTGGCTTCTGGATGGAAAAGACCCAACCAGCAGGACCCCAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACCCTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACCGCACACAGAGGACCAGCAATGTTAAAGGACCTGCAGTGAGCAGCACTCCCACAGTTCTGATCAGGAGGTCTCTCCCAGACTTACTGGATGGAGACAGTGCTGTGCTGGAGTGTGCCATCACACAACTCTCCTCCAGTGACATCTACGTCACCTTTCAGGCCAATGGGGTTGATTTCCCTGAGAAACAGTATGTTGATCTGCCTGCCTCCAAAGACCACCATTCACTCACCAGACGGTTCTCTATACCCACATCACACTGGAAGAAAGACAACACTTTCACCTGTAAAGTGAACCAAGGCTACTCCAACAGCTGGGTGTCTAACTCCACAGGAACACTTTTTGGACCTGCAGTGAGCAGCACTCCCACAGTTCTGATCAGGAGGTCTCTCCCAGACTTACTGGATGGAGACAGTGCTGTGCTGGAGTGTGCCATCACACAACTCTCCTCCAGTGACCTCTACGTCACCTTTCAGGCCAATGGGGTTGATTTCCCTGAGAAACAGTATGTTGATCTGCCTGCCTCCAAAGACCACCATTCACTCACCAGACGGTTCTCTATACCCACATCACACTGGAAGAAAGACAACACTTTCACCTGTAAAGTCAACCAAGGCTACTCCAACAGCTGGGTGTCTAACTCCACAGGAACACTTTTTGGTGAACCGTCCATGGAACTCCTTCTAGTCCCCAATGAGGAGCTGTCAGGCTCAGGGACCCAGAAACTCATGTGTTCTGGGCGGGGCTTCAACCCTCAGATCAAGTGGCTGTCTGGATCTAATCAGAGGTCTGCAGCAGACAATGAGAGAAGGATGAGGGAAGACGGACATGTGGCAGTAACCAGTCATATCACAGTAACACAGCAGGAGTGGAATGAGGGGAAGGACTTCATCTGTGAGGTCATAGACAAAGATCTTCAGAAAACTGTCAGGAAGAGCACCAGTTTATGCACAGGTGAACCGTCCATGGAACTCCTTCTAGTCCCCAATGAGGAGCTGTCAGGCTCAGGGACCCAGAAACTCATGTGTTCTGGGCGGGGCTTCAACCCTCAGATCAAGTGGCTCTCTGTGTCTGCAGCAGCCTATGAGATTAGGATGGGGGAAGACGAACGTGTGGCAGTAACCAGTCATATCACAGTAACACAGCAGGAGTGGAACCAGGGGAAGAACTTCACCTGTGAGGTCATCGACAAGTATCTTCAGAAAGAGGATCTTCAGAAAGTCAGAAAGAGCATCAATATATGTGCAGTGACTCCAATATCGTCTCAGAAAGTGGGGGTGTACCTACAGGGACCCACTCTTCAGGAGCTGAGGACAGGTGGACAGGTGCCTGTCACCTGCCTGCTGGTGGGTCCCAGACTTGGGGACTTTTCTGTCAGCTGGAAGGTGGATGGGTTTGTGGCTTCTCAAGGTGGGGTCACACGGGCCCCAAAGGACCATTCCAATGGGACACAGACTGAGCAGATCATGTTTAATGTGTCTGCGAGGGATTGGCATGCACACAAACTTGTGTCTTGTGAGGTGAAGCACCGCTGCTCCAGCCAAGCCCAGGTGGAGCATATCACCAAATGCAGAGATCCCAAGCCACCCTCTATAAAGATAGTGAGACCATCAGATTCTGATCTATGGGGGTCAAATAATGCCACACTGCTTTGCTTGGTGTCTGGGTTCTTCCCCTCTGATGTAATAGTGAATTGGGAGAAGGCCGGCAGTCGTCTACCTTTTTCGCGCTACTCCAGTATCCCATCATTCCTTTATGCAGGGAGCAGCACCTACTCCATGAACAGTAGACTCATCGTGCCCAGGTCCGAGTGGGATCAGAACTCCAATTACTCATGTGCTGTCAGACACGAGTCCTCCGAGAGACCTATCACCCACACAATAGAGAATGTATTTGGCTCAGTGACCCCCTCTGCACCAACAGCAACCCTGCTCCAGGGTCCCAGTGAGCTCGTCTGCCTGGTGCTTGGCTTCAGCCCTTCGGACATCAACATCACCTGGCTGCTGGACAACGTCACAGAGCTGTGGAACAACAACACTAGCACCACCTACAGGGCACCAGGAGGAAAGTTTGGCATCAGGAGCCACCTGAGCCTGGCACACCAGGACTGGACACCGGGGGCTGTTTACACCTGCAGGGTGACCCACACCACCCAGACTCTGGCCCTGAACATATCCAAACCAGGTGTCTGTCTGTCAGTTCACTCAATTCTGATACAA

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (SALMON-CWHWQTE5Y). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHDD*02	IMGT	IMGT

External records i

IMGT: IGHDD*02

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/SALMON-CWHWQTE5Y/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases