SALMON-DEFDT4I42
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHD6*01, IGHD6D*01, IGHD9*01: a Salmo salar IGH D allele sequence, 12 nt, functional. The nucleotide sequence is below, with every recorded name and its source.
| Species | Salmo salar (NCBITAXON:8030) |
|---|---|
| Locus / type | IGH / D |
| Functional i | True |
| Length | 12 nt |
Coding sequence (nt)
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (SALMON-DEFDT4I42). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHD6*01, IGHD6D*01, IGHD9*01. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHD6*01 | IMGT | IMGT |
| IGHD6D*01 | IMGT | IMGT |
| IGHD9*01 | IMGT | IMGT |
External records i
IMGT: IGHD6*01
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| d_rs_3 | CACAGTGATACCCACCAATACAAAAACC | IMGT | SALMON-RS3F6O |
| d_rs_3 | CACAGTGATATACACCAATACAAAAACC | IMGT | SALMON-RSAHVV |
| d_rs_3 | CACAGTGATACACACCAATACAAAAACC | IMGT | SALMON-RVR6HD |
| d_rs_5 | GGTTTTTGTAATGGTGTGTGTCACTGTG | IMGT | SALMON-R7KYVA |
| d_rs_5 | GGTTTTTGTAATGGTGTGTGTCATTGTG | IMGT | SALMON-RMXGDK |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Restricted for D genes: only 12 nt alleles are compared, position by position. D genes are too short (8–148 nt, median 19 nt) for edit-distance scores to be interpreted reliably; the metric can open gaps that inflate identity, and at 19 nt the 0.75 identity floor is about four mismatches. A D allele is therefore compared only against D alleles of exactly the same length, scored position by position. Alleles of the same gene that differ in length are not ranked here; separating those requires a multiple-sequence alignment, not a pairwise score.
Ranks D alleles of the same length,
by positional identity.
Also available at /api/sequences/SALMON-DEFDT4I42/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases