SALMON-JIA3O5XRR
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHJ5*02, IGHJ5D*02: a Salmo salar IGH J allele sequence, 52 nt, not recorded. The nucleotide sequence is below, with every recorded name and its source.
| Species | Salmo salar (NCBITAXON:8030) |
|---|---|
| Locus / type | IGH / J |
| Functional i | None |
| Length | 52 nt |
Coding sequence (nt)
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (SALMON-JIA3O5XRR). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHJ5*02, IGHJ5D*02. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHJ5*02 | IMGT | IMGT |
| IGHJ5D*02 | IMGT | IMGT |
External records i
IMGT: IGHJ5*02
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| j_rs | TGTTTTTTATACCACTTGTTAAGGTAATTGAACACAGCT | IMGT | SALMON-RHMSG5 |
| j_rs | TGCTTTTTATACCACTTGTTAAGGTAATTAAACACAGCT | IMGT | SALMON-RZPZNF |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/SALMON-JIA3O5XRR/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases