SALMON-VVKHJW2LD

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesSalmo salar LocusIGH TypeV FunctionalNone Length326 nt

IGHV2D-129*01, IGHV2D-88*01: a Salmo salar IGH V allele sequence, 326 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Salmo salar (NCBITAXON:8030)
Locus / type	IGH / V
Functional i	None
Length	326 nt
Protein UID i	SALMON-VP-KXYCXQ (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

326 nt

GGTCAGAATCTGGAGTCCATTCCCTCCAGCCCAGTCCAGAAAAAGCCTGGAGAAACTCTCAGTCTGTCCTGTAAGATATCTGGATATACCGTTACCAGCCACCACACACACTGGATACGACAGCCAGCAGGAAAATCCCTGGAGTGGATGGGTTATTCTGGATTACGCCTAGGTTACCATGCTAGAAGGTTTGAAGGACGTATGGAAACCACTAAAGATACTAGCAACAGCATGTTGACTTTTTTATTACTGTGCACGAGAGACACAGTGGTGTGAGTGAGTGGAGGATCTGTACAAAAACCCCTCAGAGAATCTAACTGGCAATC

Amino-acid sequence (V-REGION)

108 aa

GQNLESIPSSPVQKKPGETLSLSCKISGYTVTSHHTHWIRQPAGKSLEWMGYSGLRLGYHARRFEGRMETTKDTSNSMLTFLLLCTRDTVV*VSGGSVQKPLRESNWQ

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (SALMON-VVKHJW2LD). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV2D-129*01, IGHV2D-88*01. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV2D-129*01	IMGT	IMGT
IGHV2D-88*01	IMGT	IMGT

External records i

IMGT: IGHV2D-129*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTG	IMGT	SALMON-R4U3NQ
v_rs	CACAGTGAGCATCAGTACAGCAGAGTAACATCCAAT	IMGT	SALMON-R5THSN

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGACAGGAAAACTCTACCTTCTGCTGCTCTCTCTCTGTCTGACCTGTTGTGAT	46 + 8 nt	IMGT	SALMON-LNNEZN

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/SALMON-VVKHJW2LD/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases