SHEEP-VFRKY56VN
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
TRAV1*01: a Ovis aries TRA V allele sequence, 275 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Ovis aries (NCBITAXON:9940) |
|---|---|
| Locus / type | TRA / V |
| Functional i | None |
| Length | 275 nt |
| Protein UID i | SHEEP-VP-ARPICI (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: formerly TRAV1-1*01 (to 2016-12-19);
Allele names i
Every name below denotes this exact sequence (SHEEP-VFRKY56VN). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| TRAV1*01 | IMGT | IMGT |
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| TRAV1-1*01 | 2016-12-19 |
External records i
IMGT: TRAV1*01
Literature references i
PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 27460926 | Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq. | name mentioned* | literature_supp |
| 32868763 | Single-cell RNA sequencing identifies shared differentiation paths of mouse thymic innate T cells. | name mentioned* | literature_supp |
| 38658646 | De novo identification of CD4+ T cell epitopes. | name mentioned* | literature_supp |
| 38762584 | Invariant γδTCR natural killer-like effector T cells in the naked mole-rat. | name mentioned* | literature_supp |
* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACGGTGACTGTGAGGTCTTTTCAGCTGCTCCAAAATT | IMGT | SHEEP-RUGROT |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGTGGAATTTTTTCCTTCTTTGTGTTTCCCTGACAGTGAGAGGCTCTGCA | 43 + 8 nt | IMGT | SHEEP-L7PXR7 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/SHEEP-VFRKY56VN/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases