TROUT-VFM2WFTD2
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV7D-23-1*02, IGHV7D-44*01, IGHV7D-45*01, IGHV7D-61*01, IGHV7D-62*01: a Oncorhynchus mykiss IGH V allele sequence, 307 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Oncorhynchus mykiss (NCBITAXON:8022) |
|---|---|
| Locus / type | IGH / V |
| Functional i | None |
| Length | 307 nt |
| Protein UID i | TROUT-VP-ETL2XT (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (TROUT-VFM2WFTD2). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 5 different allele designations: IGHV7D-23-1*02, IGHV7D-44*01, IGHV7D-45*01, IGHV7D-61*01, IGHV7D-62*01. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV7D-23-1*02 | IMGT | IMGT |
| IGHV7D-44*01 | IMGT | IMGT |
| IGHV7D-45*01 | IMGT | IMGT |
| IGHV7D-61*01 | IMGT | IMGT |
| IGHV7D-62*01 | IMGT | IMGT |
External records i
IMGT: IGHV7D-23-1*02
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGATACGAACCAATACCAGACCTGAACAATTACC | IMGT | TROUT-R35M7I |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGTTCTCTGCATCTCTGCTGCTTCTCCTGCTGGCAGCTGCCTCTTATGTATGGTGCGGT | 46 + 14 nt | IMGT | TROUT-LITLPR |
| ATGAAAGACCAGCTAGATATACTGTCTTTATATTACAACAGACCAGATGTATGGTGCGGT | 46 + 14 nt | IMGT | TROUT-LUHZPD |
| ATGCAAAGTCTCCCTCCCCTTCATCCCTTTATATGTATGGTGCGGT | 32 + 14 nt | IMGT | TROUT-LXK46R |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/TROUT-VFM2WFTD2/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases