TROUT-VRLDU6SC5

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesOncorhynchus mykiss LocusIGH TypeV FunctionalNone Length290 nt

IGHV1D-38*01: a Oncorhynchus mykiss IGH V allele sequence, 290 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Oncorhynchus mykiss (NCBITAXON:8022)
Locus / type	IGH / V
Functional i	None
Length	290 nt
Protein UID i	TROUT-VP-V2PGTJ (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

290 nt

GGTTAGACACTGACGGAGTCTGAATCAGTGGTTAAAAAGCATGGAGAATCCCACAAACTGACCTGTACATATTCTGGGTTTGGTGGCAACTATTGGAATGCTTGGATCAGACAGGCTCCTGGGAAAGGACTGGAGTGGGTTGCAACTATCAGTGATGGTGGCAGCACTTACTACCCCCAGTCTGTTCAGGGTCGGGTCACCATCTCCAGAGACAACAGCAAGCAGCAGGTGTATCTCCAGATGAACAGTCTGAAGACTGAAGACTCTGCTGTTTATTATTGTGCCAGAGA

Amino-acid sequence (V-REGION)

96 aa

G*TLTESESVVKKHGESHKLTCTYSGFGGNYWNAWIRQAPGKGLEWVATISDGGSTYYPQSVQGRVTISRDNSKQQVYLQMNSLKTEDSAVYYCAR

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (TROUT-VRLDU6SC5). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV1D-38*01	IMGT	IMGT

External records i

IMGT: IGHV1D-38*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGACACAGGATGCTGCAGCGGTGTACAAAAACT	IMGT	TROUT-RCIP27

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGAGGACTGCCTGGACTTTAGTACTCATATTGGTGTCTGTAAAAAGTACCATCATG	46 + 11 nt	IMGT	TROUT-L7Q6BT

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/TROUT-VRLDU6SC5/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases