AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS ORANGSUM-REXGWW

SpeciesORANGSUM
TypeV-RS · complete signal, 3' of V (39 nt)
Sources IMGT
CACAGTG HEPTAMER 7 nt AGGGGAAGTCAGTGTGAGCCCAG spacer · 23 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAGTGAGGGGAAGTCAGTGTGAGCCCAGACACAAACC

Find similar RSS

Alleles with this RSS variant

5 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV3-121*01 ORANGSUM IGH IMGT ORANGSUM-VDHNSHSQE
IGHV3-27*01 ORANGSUM IGH IMGT ORANGSUM-VEXMZKH3O
IGHV3-43*01 ORANGSUM IGH IMGT ORANGSUM-VW2WCQZJJ
IGHV3-43*02 ORANGSUM IGH IMGT ORANGSUM-VLKFMUJJD
IGHV3-84*01 ORANGSUM IGH IMGT ORANGSUM-VTJ6ACGAD