AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS ORANGSUM-RPS4JV

SpeciesORANGSUM
TypeV-RS · complete signal, 3' of V (39 nt)
Sources IMGT
CACAGCG HEPTAMER 7 nt CTGCAAGGCTGTCTCCTCTCTGC spacer · 23 nt ACATAAAGG NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAGCGCTGCAAGGCTGTCTCCTCTCTGCACATAAAGG

Find similar RSS

Alleles with this RSS variant

5 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
TRBV6-6*01 ORANGSUM TRB IMGT ORANGSUM-VDTCDTJZY
TRBV6-6*02 ORANGSUM TRB IMGT ORANGSUM-V6UG73T2U
TRBV6-6*03 ORANGSUM TRB IMGT ORANGSUM-VLD65CSKQ
TRBV6-8*01 ORANGSUM TRB IMGT ORANGSUM-VPY6FQDEH
TRBV6-8*02 ORANGSUM TRB IMGT ORANGSUM-VY3KWH73V