AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-R2L6ZP

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (37 nt)
Sources MUSA
CTCTATG HEPTAMER 7 nt GCTGTACATAAGGTCCCAAGT spacer · 21 nt GAGGAAACA NONAMER 9 nt
Heptamer Spacer (21 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

37 nt
CTCTATGGCTGTACATAAGGTCCCAAGTGAGGAAACA

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Alleles with this RSS variant

8 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV3-6JOO*03_g13a_g15t_21caca24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c71t_c77t_t78c_g79a_a85g_t89g_109ttgt112_g114a_a117t_a119g_121caag124_c126t_g128a_a129c_c134g_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_c174t_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_t231c_g239a_a240g_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 RHESUS IGH MUSA RHESUS-V6TP2FFHL
IGHV3-6JOO*03_g13a_g15t_21caca24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c71t_t78c_g79a_a85g_t89g_109ttgt112_g114a_a117t_a119g_121caag124_c126t_g128a_a129c_a138c_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_c174t_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_t231c_g239a_a240g_c249t_a253t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 RHESUS IGH MUSA RHESUS-VZEHQVHVZ
IGHV3-6JOO*03_g13a_g15t_21caca24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c71t_t78c_g79a_a85g_t89g_109ttgt112_g114a_a117t_a119g_121caag124_c126t_g128a_a129c_a138c_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_c174t_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_t231c_g239a_a240g_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 RHESUS IGH MUSA RHESUS-VAK3ZQFZC
IGHV3-6JOO*03_g13a_g15t_21cata24_g26a_a27g_g32a_t34c_g37a_t38a_g42a_g49a_g50a_t52c_c53t_c71t_g73a_c77t_t78c_g79a_c84t_a85g_t89g_109ttgt112_g114a_a117t_a119g_121caag124_c126t_g128a_a129c_c134g_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_c174t_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_t231c_g239a_a240g_c248t_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 RHESUS IGH MUSA RHESUS-V4KPJRKM4
IGHV3-6JOO*03_g13a_g15t_21cata24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c63t_c71t_t78c_g79a_a85g_t89g_109ttgt112_g114a_a117t_a119g_121caag124_c126t_g128a_a129c_c134g_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_c174t_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_t231c_g239a_a240g_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 RHESUS IGH MUSA RHESUS-VTD3PWOFN
IGHV3-6JOO*05_g13a_g15t_21caca24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c71t_t78c_g79a_c84t_a85g_t89g_109ttgt112_g114a_g117t_a119g_t121c_g123a_c126t_g128a_a129c_g133t_a138c_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_g239a_a240g_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 RHESUS IGH MUSA RHESUS-VHT2YWNQG
IGHV3-6JOO*05_g13a_g15t_21caca24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c71t_t78c_g79a_c84t_a85g_t89g_a109t_c110t_a112t_g114a_g117t_a119g_t121c_g123a_c126t_g128a_a129c_g133t_a138c_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_g239a_a240g_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 RHESUS IGH MUSA RHESUS-VLVOVU7MQ
IGHV3-6JOO*05_g13a_g15t_21cata24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c71t_t78c_g79a_a85g_t89g_109ttgt112_g114a_g117t_a119g_121caag124_c126t_g128a_a129c_g133t_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_g239a_a240g_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 RHESUS IGH MUSA RHESUS-VY5CY6DW7