RHESUS-V6TP2FFHL
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-6JOO*03_g13a_g15t_21caca24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c71t_c77t_t78c_g79a_a85g_t89g_109ttgt112_g114a_a117t_a119g_121caag124_c126t_g128a_a129c_c134g_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_c174t_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_t231c_g239a_a240g_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320: a Macaca mulatta IGH V allele sequence, 276 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 276 nt |
| Protein UID i | RHESUS-VP-CC4J5W (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-V6TP2FFHL). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-6JOO*03_g13a_g15t_21caca24_g26a_a27g_g32a_t34c_g37a_t38g_g42a_g49a_g50a_t52c_c53t_c71t_c77t_t78c_g79a_a85g_t89g_109ttgt112_g114a_a117t_a119g_121caag124_c126t_g128a_a129c_c134g_g144a_a145g_g151c_g156a_159aata162_a164g_c165t_g171a_c174t_g190c_a194t_a197g_t199c_t203g_c209a_c223a_a229t_t231c_g239a_a240g_c249t_c258g_c261g_c276t_c279t_c296t_a297g_301--------------------320 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CTCTATGGCTGTACATAAGGTCCCAAGTGAGGAAACA | MUSA | RHESUS-R2L6ZP |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGGGTTTGAACAAAGCTGAATTTTTCTTGTTGTTATTTTCAAAGTTGCAGGTTTTCAGTGT | 46 + 17 nt | MUSA | RHESUS-LHBYRO |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-V6TP2FFHL/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases