AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-R2P5CZ

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (37 nt)
Sources MUSA
CAGGGAA HEPTAMER 7 nt GCACAGGACCACCAGGCGGCG spacer · 21 nt CTCCAGACC NONAMER 9 nt
Heptamer Spacer (21 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

37 nt
CAGGGAAGCACAGGACCACCAGGCGGCGCTCCAGACC

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Alleles with this RSS variant

2 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV4-2JI5*21_g12a_a14t_g15a_t19c_g22t_a33g_a41g_c43t_t45c_g48a_g49c_55------------------------------------90_103----------t113_g119c_g123a_t125c_g128a_c129g_c134a_c136t_a138t_g146c_a147g_151---------159_t163c_t165c_a166c_g170-_t171-_g172-_174ctcc177_t186g_g187c_g189c_c195a_g196c_a200t_a203g_c207a_t208c_c211t_a214c_a220-_t222c_g224a_a225g_g226c_a229t_t234c_c236g_a237c_c243t_g246a_a253g_a254c_c261a_c264t_a268c_c271t_c276t_t279c_c284t_c285g_g289a_c290a_a293g_g301a_t302c_g303a_a308c_t310c_c314g_a318g_g319c_321cagaatggggaccccagtgtgagcccagacacaaacctccctg363 RHESUS IGH MUSA RHESUS-VQ2II4T5U
IGHV4-2JI5*21_g12a_a14t_g15a_t19c_g22t_a33g_a41g_c43t_t45c_g48a_g49c_55------------------------------------90_103----------t113_g119c_g123a_t125c_g128a_c129g_c134a_c136t_a138t_g146c_a147g_151---------159_t163c_t165c_a166c_g170-_t171-_g172-_174ctcc177_t186g_g187c_g189c_c195a_g196c_a200t_a203g_c207a_t208c_c211t_a214c_a220-_t222c_g224a_a225g_g226c_a229t_t234c_c236g_a237c_c243t_g246a_a253g_a254c_c261a_c264t_a268c_c271t_c276t_t279c_c284t_c285g_g289a_c290a_a293g_g301a_t302c_g303a_a308c_t310c_c314g_a318g_g319c_321cagaatggggaccccagtgtgagcccagacacaaacttccctg363 RHESUS IGH MUSA RHESUS-VW3GGKULO