RHESUS-VQ2II4T5U
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-2JI5*21_g12a_a14t_g15a_t19c_g22t_a33g_a41g_c43t_t45c_g48a_g49c_55------------------------------------90_103----------t113_g119c_g123a_t125c_g128a_c129g_c134a_c136t_a138t_g146c_a147g_151---------159_t163c_t165c_a166c_g170-_t171-_g172-_174ctcc177_t186g_g187c_g189c_c195a_g196c_a200t_a203g_c207a_t208c_c211t_a214c_a220-_t222c_g224a_a225g_g226c_a229t_t234c_c236g_a237c_c243t_g246a_a253g_a254c_c261a_c264t_a268c_c271t_c276t_t279c_c284t_c285g_g289a_c290a_a293g_g301a_t302c_g303a_a308c_t310c_c314g_a318g_g319c_321cagaatggggaccccagtgtgagcccagacacaaacctccctg363: a Macaca mulatta IGH V allele sequence, 280 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 280 nt |
| Protein UID i | RHESUS-VP-O2ELUP (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VQ2II4T5U). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-2JI5*21_g12a_a14t_g15a_t19c_g22t_a33g_a41g_c43t_t45c_g48a_g49c_55------------------------------------90_103----------t113_g119c_g123a_t125c_g128a_c129g_c134a_c136t_a138t_g146c_a147g_151---------159_t163c_t165c_a166c_g170-_t171-_g172-_174ctcc177_t186g_g187c_g189c_c195a_g196c_a200t_a203g_c207a_t208c_c211t_a214c_a220-_t222c_g224a_a225g_g226c_a229t_t234c_c236g_a237c_c243t_g246a_a253g_a254c_c261a_c264t_a268c_c271t_c276t_t279c_c284t_c285g_g289a_c290a_a293g_g301a_t302c_g303a_a308c_t310c_c314g_a318g_g319c_321cagaatggggaccccagtgtgagcccagacacaaacctccctg363 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CAGGGAAGCACAGGACCACCAGGCGGCGCTCCAGACC | MUSA | RHESUS-R2P5CZ |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGAGATTTCTGTGTGTCATCCTCTGCCTGATGGCTGTACCTCCATCCCTGAGCGTCCTGCAC | 46 + 17 nt | MUSA | RHESUS-LGI4UT |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VQ2II4T5U/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases