AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-R2WWAA

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (39 nt)
Sources MUSA
CACAGTG HEPTAMER 7 nt AGGGGAAATCATTGTGAGCCCAG spacer · 23 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAGTGAGGGGAAATCATTGTGAGCCCAGACACAAACC

Find similar RSS

Alleles with this RSS variant

5 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV4-5TXH*02_i0ga_g3a_g4c_7--tg10_12ttctc16_19cgcact24_c26t_a27t_g36t_t45c_g48a_g49c_g57c_c65t_c69t_t72c_g73a_g80t_t81a_a83t_i90aca_g101c_g107c_a110c_a113g_g119t_g128a_c129t_c135g_g145a_g146a_g153c_t159c_g160a_a164g_t167c_c168a_a169g_t172c_a184g_g185a_i188a_a190t_c195a_g197c_a200-_c201-_g207a_t208c_c209a_i215gag_g224c_t227g_t234c_a237c_g241t_a242c_g246a_i247g_c249a_g252a_c255a_c261t_c263t_g267a_a268c_277gacc280_c284a_g286a_c287a_g289a_c290a_g292t_g297a_c299t_g301a_t304a_a308c_c309t_g311a_g313t_c314a_g315a_g317a_g319a RHESUS IGH MUSA RHESUS-V22NS7LL6
IGHV4-5TXH*02_i0ga_g3a_g4c_7--tg10_12ttctc16_19cgcact24_c26t_a27t_g36t_t45c_g48a_g49c_g57c_c65t_c69t_t72c_g73a_g80t_t81a_a83t_i90aca_g101c_g107c_a110c_a113g_g119t_g128a_c129t_c135g_g145a_g146a_g153c_t159c_g160a_a164g_t167c_c168a_a169g_t172c_a184g_g185a_i188a_a190t_c195a_g197c_a200-_c201-_g207a_t208c_c209t_i215gag_g224c_t227g_c230t_t234c_a237c_g241t_a242c_g246a_i247g_c249g_g252a_c255a_c261t_c263t_g267a_a268c_277gacc280_c284a_g286a_c287a_g289a_c290a_g292t_g297a_c299t_g301a_t304a_a308c_c309t_g311a_g313t_c314a_g315a_g317a_g319a RHESUS IGH MUSA RHESUS-VEH3YMI5B
IGHV4-5TXH*02_i0ga_g3a_g4c_7--tg10_12ttctc16_19cgcact24_c26t_a27t_g36t_t45c_g48a_g49c_g57c_c65t_c69t_t72c_g73a_g80t_t81a_a83t_i90aca_g101c_g107c_a110c_a113g_g119t_g128a_c129t_c135g_g145a_g146a_g153c_t159c_g160a_a164g_t167c_c168a_a169g_t172c_a184g_g185a_i188a_a190t_c195a_g197c_a200-_c201-_g207a_t208c_c209t_i215gag_g224c_t227g_t234c_a237c_g241t_a242c_g246a_i247g_c249g_g252a_c255a_c261t_c263t_g267a_a268c_277gacc280_c284a_g286a_c287a_g289a_c290a_g292t_g297a_c299t_g301a_t304a_a308c_c309t_g311a_g313t_c314a_g315a_g317a_g319a RHESUS IGH MUSA RHESUS-VUXSQPHL3
IGHV4-5TXH*02_i0ga_g3a_g4c_7--tg10_12ttctc16_19cgcact24_c26t_a27t_g36t_t45c_g48a_g49c_g57c_c65t_c69t_t72c_g73a_g80t_t81a_a83t_i90aca_g101c_g107c_a110c_a113g_g119t_g128a_c129t_c135g_g145a_g146a_g153c_t159c_g160a_a164g_t167c_c168a_a169g_t172c_a184g_g185a_i188a_a190t_c195a_g197t_a200-_c201-_g207a_t208c_c209t_i215gag_g224c_t227g_t234c_a237c_g241t_a242c_g246a_i247g_c249g_g252a_c255a_c261t_c263t_g267a_a268c_277gacc280_c284a_g286a_c287a_g289a_c290a_g292t_g297a_c299t_g301a_t304a_a308c_c309t_g311a_g313t_c314a_g315a_g317a_g319a RHESUS IGH MUSA RHESUS-VQJHALPFP
IGHV4-7BJU*05_i0ga_g3a_g4c_7--tg10_12ttctc16_19cgcact24_c26t_a27t_g36t_t45c_g48a_g49c_g57c_c65t_c69t_t72c_g73a_80tatt83_g92c_c93a_g101c_t102c_g103a_t106g_a107c_c108t_a110c_a113g_g119t_g128a_c129t_c135g_g145a_g146a_g153c_t159c_g160a_a164g_t167c_c168a_a169g_t172c_a175g_g176a_i188a_a190t_c195a_g197c_a200-_c201-_g207a_t208c_c209t_i215gag_g224c_t227g_t234c_a237c_g241t_a242c_g246a_c248g_i249ga_g252a_c255a_c261t_c263t_g267a_a268c_277gacc280_c284a_g286a_c287a_g289a_c290a_g292t_g297a_c299t_g301a_t304a_a308c_c309t_g311a_g313t_c314a_g315a_g317a_g319a RHESUS IGH MUSA RHESUS-V7CLKPMTY