RHESUS-VUXSQPHL3
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-5TXH*02_i0ga_g3a_g4c_7--tg10_12ttctc16_19cgcact24_c26t_a27t_g36t_t45c_g48a_g49c_g57c_c65t_c69t_t72c_g73a_g80t_t81a_a83t_i90aca_g101c_g107c_a110c_a113g_g119t_g128a_c129t_c135g_g145a_g146a_g153c_t159c_g160a_a164g_t167c_c168a_a169g_t172c_a184g_g185a_i188a_a190t_c195a_g197c_a200-_c201-_g207a_t208c_c209t_i215gag_g224c_t227g_t234c_a237c_g241t_a242c_g246a_i247g_c249g_g252a_c255a_c261t_c263t_g267a_a268c_277gacc280_c284a_g286a_c287a_g289a_c290a_g292t_g297a_c299t_g301a_t304a_a308c_c309t_g311a_g313t_c314a_g315a_g317a_g319a: a Macaca mulatta IGH V allele sequence, 302 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 302 nt |
| Protein UID i | RHESUS-VP-YZL25F (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VUXSQPHL3). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-5TXH*02_i0ga_g3a_g4c_7--tg10_12ttctc16_19cgcact24_c26t_a27t_g36t_t45c_g48a_g49c_g57c_c65t_c69t_t72c_g73a_g80t_t81a_a83t_i90aca_g101c_g107c_a110c_a113g_g119t_g128a_c129t_c135g_g145a_g146a_g153c_t159c_g160a_a164g_t167c_c168a_a169g_t172c_a184g_g185a_i188a_a190t_c195a_g197c_a200-_c201-_g207a_t208c_c209t_i215gag_g224c_t227g_t234c_a237c_g241t_a242c_g246a_i247g_c249g_g252a_c255a_c261t_c263t_g267a_a268c_277gacc280_c284a_g286a_c287a_g289a_c290a_g292t_g297a_c299t_g301a_t304a_a308c_c309t_g311a_g313t_c314a_g315a_g317a_g319a | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGAGGGGAAATCATTGTGAGCCCAGACACAAACC | MUSA | RHESUS-R2WWAA |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGACTTGCAATTATATTCCCATTCTGTCGGTTGGAATTTTTTCCACAGAACCTGTGCATGCC | 46 + 17 nt | MUSA | RHESUS-LIHR6A |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VUXSQPHL3/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases