AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-R6Y4SE

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (38 nt)
Sources MUSA
CACAATG HEPTAMER 7 nt AGGGACTTTATTGTGAGCCTGG spacer · 22 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (22 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

38 nt
CACAATGAGGGACTTTATTGTGAGCCTGGACACAAACC

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Alleles with this RSS variant

1 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV4-HJCG*02_3acaa6_a8t_10tgtttctca18_g21a_g22c_g23a_g25t_a26t_a27c_g31t_a33g_t38a_a41c_g42a_c43a_t45g_g57c_c66g_g70a_a77c_t81a_g83c_t85c_t87c_104-taacc109_c111g_g114c_116tcct119_g122a_i124at_126gtat129_a131t_c137t_g140a_g141a_a142g_g144t_g147a_t149a_t159c_g160c_c163t_165cgagg169_a172t_g176a_t177a_c195a_c198t_207actt210_222-------------234_a237t_g241t_a242c_g246a_c255a_c263-_c264-_c265-_g267a_a268c_c276-_t277-_a283t_c287g_c288t_c290a_g291a_g292c_c297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_c314-_g315a_g317a_c318a RHESUS IGH MUSA RHESUS-VTEKUS5RD