RHESUS-VTEKUS5RD
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-HJCG*02_3acaa6_a8t_10tgtttctca18_g21a_g22c_g23a_g25t_a26t_a27c_g31t_a33g_t38a_a41c_g42a_c43a_t45g_g57c_c66g_g70a_a77c_t81a_g83c_t85c_t87c_104-taacc109_c111g_g114c_116tcct119_g122a_i124at_126gtat129_a131t_c137t_g140a_g141a_a142g_g144t_g147a_t149a_t159c_g160c_c163t_165cgagg169_a172t_g176a_t177a_c195a_c198t_207actt210_222-------------234_a237t_g241t_a242c_g246a_c255a_c263-_c264-_c265-_g267a_a268c_c276-_t277-_a283t_c287g_c288t_c290a_g291a_g292c_c297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_c314-_g315a_g317a_c318a: a Macaca mulatta IGH V allele sequence, 275 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 275 nt |
| Protein UID i | RHESUS-VP-Q35PK5 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VTEKUS5RD). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-HJCG*02_3acaa6_a8t_10tgtttctca18_g21a_g22c_g23a_g25t_a26t_a27c_g31t_a33g_t38a_a41c_g42a_c43a_t45g_g57c_c66g_g70a_a77c_t81a_g83c_t85c_t87c_104-taacc109_c111g_g114c_116tcct119_g122a_i124at_126gtat129_a131t_c137t_g140a_g141a_a142g_g144t_g147a_t149a_t159c_g160c_c163t_165cgagg169_a172t_g176a_t177a_c195a_c198t_207actt210_222-------------234_a237t_g241t_a242c_g246a_c255a_c263-_c264-_c265-_g267a_a268c_c276-_t277-_a283t_c287g_c288t_c290a_g291a_g292c_c297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_c314-_g315a_g317a_c318a | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAATGAGGGACTTTATTGTGAGCCTGGACACAAACC | MUSA | RHESUS-R6Y4SE |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGTTCATTTTTCTAACAGCAGTTTATCTTTTTTATTTGATTGCAACCAGAACCCGTTAACAT | 46 + 17 nt | MUSA | RHESUS-LK36QZ |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VTEKUS5RD/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases