AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-RIHVNY

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (39 nt)
Sources MUSA
CACAATG HEPTAMER 7 nt AGGGGACTTCATTGTGAGCCTAG spacer · 23 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAATGAGGGGACTTCATTGTGAGCCTAGACACAAACC

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Alleles with this RSS variant

1 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV11-3ZCZ*01_3acaa6_a8t_10tgtttctca18_20gaca23_c25t_c26t_a27c_g31t_a33g_g36t_t38a_a41c_g42a_c43a_t45g_c47g_g48a_g57c_c65t_c66g_g70a_c71t_t81a_g83t_t85c_a88g_g92t_c93a_g104c_t105c_a109g_a110c_c111t_g113c_g114c_g116c_g117t_120--aat124_126gtat129_a131t_t133c_c137t_g140a_g141a_a142g_g144t_t149a_i158c_t159a_162tgcg165_167gggt170_g173t_t174g_g176a_t177g_g187t_c191a_g193a_c194t_203actt206_226------------237_a240t_g242t_a243c_g247a_t256a_t262-_c263-_c265t_g267a_a268c_c276-_t277-_a283t_c287g_c288t_c290a_g291a_g292c_c297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315-_g317a RHESUS IGH MUSA RHESUS-VMWBH6MUG