AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

← back to search

RSS RHESUS-RJDV73

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (38 nt)
Sources MUSA
ATCAATG HEPTAMER 7 nt TTGTAAATATTTTGGAACCCAA spacer · 22 nt ACACAAGTG NONAMER 9 nt
Heptamer Spacer (22 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

38 nt
ATCAATGTTGTAAATATTTTGGAACCCAAACACAAGTG

Find similar RSS

Alleles with this RSS variant

6 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV1-F5R3*02_c6g_c7a_c21t_t27a_c69g_t78c_g79a_t105c_c110a_c113t_g120c_g133a_c134a_c135t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_196------tg203_207ttta210_c214t_a215g_g216t_g221a_t222g_g226a_c228t_a229t_231aggg234_236ttgta240_243---a246_c248g_c249a_g252c_254aatt257_g259a_c261a_t262a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_g289a_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-VCSB6ZEBD
IGHV1-F5R3*02_c6g_c7a_c21t_t27a_c69g_t78c_g79a_t105c_c110a_c113t_g120c_g133a_c134a_c135t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_196------tg203_207ttta210_c214t_a215g_g216t_g221a_t222g_g226a_c228t_a229t_231aggg234_236ttgta240_243---a246_c248g_c249a_c251t_g252c_254aatt257_g259a_c261a_t262a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_g289a_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-V5JRSUZT4
IGHV1-F5R3*02_c6g_c7a_c21t_t27a_c69g_t78c_g79a_c86a_t105c_c110a_c113t_g120c_g133a_c134a_c135t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_196------tg203_207ttta210_c214t_a215g_g216t_g221a_t222g_g226a_c228t_a229t_231aggg234_236ttgta240_243---a246_c248g_c249a_g252c_254aatt257_g259a_c261a_t262a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_g289a_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-VFWSISK25
IGHV1-F5R3*02_c6g_c7a_c21t_c69g_t78c_g79a_t105c_c110a_c113t_g120c_g133a_c134a_c135t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_196------tg203_207ttta210_c214t_a215g_g216t_g221a_t222g_g226a_c228t_a229t_231aggggttgta240_243---a246_c248g_c249a_g252c_254aatt257_g259a_c261a_t262a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_g289a_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-VEFAYQLJA
IGHV1-F5R3*02_c6g_c7a_c21t_c69g_t78c_g79a_t105c_c110a_c113t_g120c_g133a_c134a_c135t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_196------tg203_207ttta210_c214t_a215g_g216t_g221a_t222g_g226a_c228t_a229t_231aggg234_236ttgta240_243---a246_c248g_c249a_g252c_254aatt257_g259a_c261a_t262a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_g289a_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-VHEA2QM6Y
IGHV1-F5R3*02_c6g_c7a_c16g_c21t_t27a_c69g_t78c_g79a_t105c_c110a_c113t_g120c_g133a_c134a_c135t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_196------tg203_207ttta210_c214t_a215g_g216t_g221a_t222g_g226a_c228t_a229t_231aggg234_236ttgta240_243---a246_c248g_c249a_g252c_254aatt257_g259a_c261a_t262a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_g289a_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-VGXZEC256