RHESUS-VEFAYQLJA

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalFalse Length280 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	False
Length	280 nt
Protein UID i	RHESUS-VP-JBS3YD (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VEFAYQLJA). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV1-F5R3*02_c6g_c7a_c21t_c69g_t78c_g79a_t105c_c110a_c113t_g120c_g133a_c134a_c135t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_196------tg203_207ttta210_c214t_a215g_g216t_g221a_t222g_g226a_c228t_a229t_231aggggttgta240_243---a246_c248g_c249a_g252c_254aatt257_g259a_c261a_t262a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_g289a_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t	VDJbase	MUSA

Contributed by MUSA. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	ATCAATGTTGTAAATATTTTGGAACCCAAACACAAGTG	MUSA	RHESUS-RJDV73

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGAGCAGGGCATCCGTTTCTTTAAGCAGGATTAGGGCTTGGACCCCACAGTTGCCCACTCC	46 + 17 nt	MUSA	RHESUS-LINFJC

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VEFAYQLJA/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

280 nt

CAGGTGAAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCAGTGAAGGTCTCCTGGAAGGCTTCCAGATACACCTTTACCAGCTATGTTATGCACTGGGTGCGACAGAATCTTGGACAAGGGCTTGAGTGGATGGGATTTTAGTTATTTGAGAGATTTTTCACATGACATTTATTCTGTGAGCAAATTTCAGGGGTTGTAGAATGAACCAAATTAAGAAATCTGATACAGAACTTCCTCTGAATCAATCTTTGTAAACATCAATTTCTGA

Amino-acid sequence (V-REGION)

93 aa

QVKLVQSGAEVKKPGSSVKVSWKASRYTFTSYVMHWVRQNLGQGLEWMGF*LFERFFT*HLFCEQISGVVE*TKLRNLIQNFL*INLCKHQFL

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases